Browse Element(s) Details


Os.2218.1.S1_at

Description gb:AF068333.1
DB_XREF= gi:3201970
GEN=PSK3
TID=Os.2218.1
CNT=50
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2218 (NCBI UniGene Cluster)
DEF=Oryza sativa putative phytosulfokine peptide precursor (PSK3) mRNA, complete cds.
PROD=putative phytosulfokine peptide precursor
FL= gb:AK059860.1 gb:AF068333.1 gb:AK101186.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0526011/11Phytosulfokines 5 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05210Os.51775.1.S1_x_at11/1112+2311451..2312218expressed protein
LOC_Os12g05210Os.51775.1.S1_at11/1112+2311451..2312218expressed protein
LOC_Os12g05220OsAffx.31590.1.S1_at11/1112+2312768..2316461hypothetical protein
LOC_Os12g05220OsAffx.17852.2.S1_at2/1112+2312768..2316461hypothetical protein
LOC_Os12g05220OsAffx.11302.1.S1_at2/1112+2312768..2316461hypothetical protein
LOC_Os12g05230Os.17313.1.S1_at11/1112+2317855..2320808ATP-dependent RNA helicase, putative, expressed
LOC_Os12g05240Os.14491.2.S1_x_at3/1112+2328057..2329229transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g05240Os.47463.1.S1_x_at2/1112+2328057..2329229transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g05250OsAffx.19504.1.S1_at11/1112+2333466..2333743hypothetical protein
LOC_Os12g05260Os.2218.1.S1_at11/1112+2337073..2338158Phytosulfokines 5 precursor, putative, expressed
LOC_Os12g05270OsAffx.31592.1.S1_at11/1112+2345444..2346277Zinc finger, C3HC4 type family protein
LOC_Os12g05280OsAffx.31592.1.S1_at11/1112+2349648..2350376hypothetical protein
LOC_Os12g05290NANA12+2353230..2357996retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2218.1.S1_at--240--1571Chr12:2337363..2337387 (25 bp)
AGCTAGTGCTTCAGGATGGCGCCAC
LOC_Os12g05260
Os.2218.1.S1_at--650--6171Chr12:2337593..2337617 (25 bp)
GAGGAGGATGCTTCGCGACGCCCAC
LOC_Os12g05260
Os.2218.1.S1_at--569--131Chr12:2337720..2337744 (25 bp)
ATTAATCTACTATCTGCAGCCTGTT
LOC_Os12g05260
Os.2218.1.S1_at--920--1671Chr12:2337737..2337761 (25 bp)
AGCCTGTTTTCAACTGCATGTATCA
LOC_Os12g05260
Os.2218.1.S1_at--477--9731Chr12:2337806..2337830 (25 bp)
TAAACTGTCGTCTGTATAACCCCGT
LOC_Os12g05260
Os.2218.1.S1_at--465--6891Chr12:2337819..2337843 (25 bp)
GTATAACCCCGTTATGTACATGGTT
LOC_Os12g05260
Os.2218.1.S1_at--972--2111Chr12:2337836..2337860 (25 bp)
ACATGGTTGTATTTCTTTCTCCAAA
LOC_Os12g05260
Os.2218.1.S1_at--1053--9191Chr12:2337855..2337879 (25 bp)
TCCAAAGTGTTATCGAACTCTCTGT
LOC_Os12g05260
Os.2218.1.S1_at--712--5471Chr12:2337869..2337893 (25 bp)
GAACTCTCTGTTGATCTCTGATACA
LOC_Os12g05260
Os.2218.1.S1_at--1013--5931Chr12:2337923..2337947 (25 bp)
GAGCACTTGTGGGTTATGATCTGAC
LOC_Os12g05260
Os.2218.1.S1_at--831--10811Chr12:2337995..2338019 (25 bp)
TTGTCTTGGACTTCTCATGGTGTGA
LOC_Os12g05260
Target Sequence 
AGCTAGTGCTTCAGGATGGCGCCACCGGCAATGGCGACGAGGTTTCCGAGTTGATGGGAGCAGCTGAGGAGGAAGCAGCA
GGATTATGCGAGGAGGGGAACGAGGAGTGCGTGGAGAGGAGGATGCTTCGCGACGCCCACCTCGACTACATCTACACGCA
GAAGAGGAACAGGCCTTGAAATCTTGAATCATAATCTCCAAGTCGATACAAGGAGGAATTAATCAGTAGTAAACCTACAT
AAATTAATCTACTATCTGCAGCCTGTTTTCAACTGCATGTATCAGTGTATTAGTCGATCTAGGATAATATTTTGCATGTG
TACTCAAGTAAACTGTCGTCTGTATAACCCCGTTATGTACATGGTTGTATTTCTTTCTCCAAAGTGTTATCGAACTCTCT
GTTGATCTCTGATACATCTGTATGTGTAGCATCAGAGAAAAGATCGAGCACTTGTGGGTTATGATCTGACGATCGAGTGT
ATGAACAGTGCTAATGGTGTAGTAAGTTTTTGCTTAATTGTCTTGGACTTCTCATGGTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2218.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis