Browse Element(s) Details


OsAffx.19503.1.S1_at

Description tigr:9640.m00433
TID=OsAffx.19503.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0516011/11Transposable element protein, putative, RnaseH
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05130NANA12+2263758..2264336hypothetical protein
LOC_Os12g05137NANA12+2267863..2268350NA
LOC_Os12g05144OsAffx.16036.1.S1_x_at1/1112+2271193..2272370hypothetical protein
LOC_Os12g05144Os.49257.1.S1_x_at1/1112+2271193..2272370hypothetical protein
LOC_Os12g05151NANA12+2272631..2272884hypothetical protein
LOC_Os12g05160OsAffx.19503.1.S1_at11/1112+2280167..2281290Transposable element protein, putative, RnaseH
LOC_Os12g05170NANA12+2285745..2286920expressed protein
LOC_Os12g05180Os.20300.1.S1_at11/1112+2287583..2289545expressed protein
LOC_Os12g05190OsAffx.7487.1.S1_at11/1112+2299628..2300793hypothetical protein
LOC_Os12g05190OsAffx.23706.1.S1_at2/1112+2299628..2300793hypothetical protein
LOC_Os12g05200OsAffx.31589.1.S1_s_at11/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05200OsAffx.31589.1.S1_at11/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05200OsAffx.27256.1.S1_s_at4/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05200OsAffx.25712.1.S1_at2/1112+2304432..2308611DNA-binding family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19503.1.S1_at--536--9371Chr12:2280714..2280738 (25 bp)
TCGACCAGAGCCCTTCGGAGAGAAG
LOC_Os12g05160
OsAffx.19503.1.S1_at--470--631Chr12:2280662..2280686 (25 bp)
ATGCTATGTTGATGCCTCCTGGGAA
LOC_Os12g05160
OsAffx.19503.1.S1_at--224--7671Chr12:2280619..2280643 (25 bp)
GGGATCTTTTTTCATCTTCCTGCTA
LOC_Os12g05160
OsAffx.19503.1.S1_at--478--10811Chr12:2280566..2280590 (25 bp)
TTGTCACTTGACTGAATCCCCTTTA
LOC_Os12g05160
OsAffx.19503.1.S1_at--322--5211Chr12:2280553..2280577 (25 bp)
GAATCCCCTTTACAAGCTGAACTGC
LOC_Os12g05160
OsAffx.19503.1.S1_at--571--3311Chr12:2280485..2280509 (25 bp)
CACAGACACAATCTTCCTCATGGAT
LOC_Os12g05160
OsAffx.19503.1.S1_at--1056--4431Chr12:2280408..2280432 (25 bp)
GCCATTGGAGTCTTTTACCTATTTG
LOC_Os12g05160
OsAffx.19503.1.S1_at--262--8271Chr12:2280385..2280409 (25 bp)
TGGAGTCAAATCTTAACCTTCTTAC
LOC_Os12g05160
OsAffx.19503.1.S1_at--1038--5671Chr12:2280357..2280381 (25 bp)
GACATTTGCTCAAGGTCCACTGGAT
LOC_Os12g05160
OsAffx.19503.1.S1_at--905--2071Chr12:2280246..2280270 (25 bp)
ACATTGCTCATATTGCTTACCCATC
LOC_Os12g05160
OsAffx.19503.1.S1_at--1125--351Chr12:2280219..2280243 (25 bp)
ATCAATGTTTTGCTTCTACCCTAAG
LOC_Os12g05160
Target Sequence 
TCGACCAGAGCCCTTCGGAGAGAAGAATGGAACAGCTGCCTGAAGGTAACAGATGCTATGTTGATGCCTCCTGGGAACAT
AATAAAGCATGCATTGGGATCTTTTTTCATCTTCCTGCTACTCACAATGCTCTTTTCATTAAAGCTTTTTGTCACTTGAC
TGAATCCCCTTTACAAGCTGAACTGCTTGCTTTGCAATTAGCTATGGAGATTGCTTTGGTTTTGAATTTCACAGACACAA
TCTTCCTCATGGATTGCTCAACGGTGGTGGACACAGCGAAGAAAGGAAACTTCCATGAAGATCCAAGCCATTGGAGTCTT
TTACCTATTTGGAGTCAAATCTTAACCTTCTTACCAGGACATTTGCTCAAGGTCCACTGGATTCCAAGACATCTCAACAA
GTTGGCAGATAAGCTAGCCAAGGATGCTAGAGGGAACCCTTCATCCCCTCCAATCTTTAGTTGCCAAAACATTGCTCATA
TTGCTTACCCATCCAATCAATGTTTTGCTTCTACCCTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19503.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis