Browse Element(s) Details


Os.53744.2.S1_x_at

Description gb:AK121185.1
DB_XREF= gi:37990808
TID=Os.53744.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53744 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070G15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023084P22, full insert sequence.
FL= gb:AK121185.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4041910/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40360Os.54823.1.S1_at9/1112+24960579..24962915F-box domain containing protein, expressed
LOC_Os12g40360OsAffx.20052.1.S1_x_at2/1112+24960579..24962915F-box domain containing protein, expressed
LOC_Os12g40360OsAffx.20052.2.S1_at1/1112+24960579..24962915F-box domain containing protein, expressed
LOC_Os12g40370OsAffx.32119.1.S1_at2/1112+24964605..24967298F-box domain containing protein
LOC_Os12g40380OsAffx.7843.1.S1_at11/1112+24968681..24969813hypothetical protein
LOC_Os12g40390OsAffx.32120.1.S1_at10/1112+24970908..24973526hypothetical protein
LOC_Os12g40400OsAffx.20053.1.S1_at11/1112+24974169..24974745hypothetical protein
LOC_Os12g40419OsAffx.32121.1.S1_at11/1112+24981489..24992912Protein kinase domain containing protein, expressed
LOC_Os12g40419Os.53744.2.S1_x_at10/1112+24981489..24992912Protein kinase domain containing protein, expressed
LOC_Os12g40419OsAffx.20054.1.S1_at10/1112+24981489..24992912Protein kinase domain containing protein, expressed
LOC_Os12g40440Os.37806.1.S1_at5/1112+24993751..24996177expressed protein
LOC_Os12g40450NANA12+24996604..24998662lipoate-protein ligase B containing protein, expressed
LOC_Os12g40460OsAffx.32122.1.S1_at11/1112+25001878..25002955Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g40460OsAffx.32122.1.S1_x_at11/1112+25001878..25002955Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g40470Os.56029.1.S1_at3/1112+25006732..25007557DC1 domain-containing protein, putative, expressed
LOC_Os12g40480Os.51888.1.S1_at11/1112+25011742..25015010expressed protein
LOC_Os12g40490Os.26366.1.S1_at11/1112+25017521..25023123LIM domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53744.2.S1_x_at--1119--4791Chr12:24992327..24992351 (25 bp)
GCTCGCTCTCGACCGCATCGGGAAG
LOC_Os12g40419
Os.53744.2.S1_x_at--789--1851Chr12:24992362..24992386 (25 bp)
ACGACATTGTCGACCCGGCGCTCGT
LOC_Os12g40419
Os.53744.2.S1_x_at--528--8631Chr12:24992403..24992427 (25 bp)
TGGGTGATGCGCTCCGTCCGCCATG
LOC_Os12g40419
Os.53744.2.S1_x_at--890--751Chr12:24992425..24992449 (25 bp)
ATGTCAGCGAGCTCGCGTTCCGGTG
LOC_Os12g40419
Os.53744.2.S1_x_at--692--4251NONE
CCGGTGCCAGGCGTTCCAGAAGGAC
NONE
Os.53744.2.S1_x_at--638--3391Chr12:24992460..24992484 (25 bp)
CAGAAGGACGTCAGGCCGGCCATGA
LOC_Os12g40419
Os.53744.2.S1_x_at--507--1911Chr12:24992653..24992677 (25 bp)
ACGTGTGGGTCAGCGACCAGAGCTC
LOC_Os12g40419
Os.53744.2.S1_x_at--1126--591Chr12:24992697..24992721 (25 bp)
ATGCCGCGATTTGCTTAGCTCTCGA
LOC_Os12g40419
Os.53744.2.S1_x_at--1036--4891Chr12:24992709..24992733 (25 bp)
GCTTAGCTCTCGATTTGACTTGTAA
LOC_Os12g40419
Os.53744.2.S1_x_at--164--6271Chr12:24992777..24992801 (25 bp)
GATGTGTCGAAATGTGTGCTACTTA
LOC_Os12g40419
Os.53744.2.S1_x_at--800--8671Chr12:24992789..24992813 (25 bp)
TGTGTGCTACTTAGCCTAGTTCTAA
LOC_Os12g40419
Target Sequence 
GCTCGCTCTCGACCGCATCGGGAAGGGGCGCGTCGACGACATTGTCGACCCGGCGCTCGTCGACCGCGCCGACGAGTGGG
TGATGCGCTCCGTCCGCCATGTCAGCGAGCTCGCGTTCCGGTGCCAGGCGTTCCAGAAGGACGTCAGGCCGGCCATGAGC
GAGGTCGCCGCCGAGCTCGCCCGGATCAGGGACGCCGCGCCGGCGTCCGTGCCGGGAGCCCGGACCGGAGCCGGCAGCCG
CCCGCCCATGGTGATCGACGTCGGCGTCGGCTTCGACGGCGTCGACGCCGCGGTGAAGAAGGTCGGGTCGCCGGTGTCGG
TGCAGGACGTGTGGGTCAGCGACCAGAGCTCGCCGTCGACCAACGGCTCCATGCCGCGATTTGCTTAGCTCTCGATTTGA
CTTGTAATTCAAAGAGGAATCTGAATTTGATGTGAATTTAACATTTTTTTGATGTGTCGAAATGTGTGCTACTTAGCCTA
GTTCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53744.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis