Browse Element(s) Details


Os.53747.1.S1_at

Description gb:AK099682.1
DB_XREF= gi:32984891
TID=Os.53747.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53747 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071H20, full insert sequence.
FL= gb:AK108456.1 gb:AK099682.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1414011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14100Os.52989.1.S1_at11/1112+7994789..7997771lysine and histidine specific transporter, putative, expressed
LOC_Os12g14110Os.5749.1.S1_at11/1112+7997904..8001880expressed protein
LOC_Os12g14120Os.27639.1.S1_x_at1/1112+8009233..8012987retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g14140Os.53747.1.S1_at11/1112+8022569..8024801expressed protein
LOC_Os12g14150Os.52246.1.S1_at11/1112+8028826..8034093expressed protein
LOC_Os12g14160NANA12+8036654..8037472hypothetical protein
LOC_Os12g14170Os.27435.1.S1_x_at5/1112+8042153..8045455transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g14170Os.46334.1.S1_x_at3/1112+8042153..8045455transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g14180OsAffx.22421.1.S1_at4/1112+8048211..8053248transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g14180OsAffx.22421.4.S1_x_at3/1112+8048211..8053248transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g14180OsAffx.22421.2.S1_at3/1112+8048211..8053248transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g14180Os.26886.3.S1_x_at1/1112+8048211..8053248transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53747.1.S1_at--261--7631Chr12:8024241..8024265 (25 bp)
GGGACAGTGATCAAATTCAGCTACA
LOC_Os12g14140
Os.53747.1.S1_at--770--9571Chr12:8024276..8024300 (25 bp)
TCTTGCACAAGACATGGAGCTACCA
LOC_Os12g14140
Os.53747.1.S1_at--22--4331Chr12:8024298..8024322 (25 bp)
CCATTTGCAGCATACGGAACGTCTC
LOC_Os12g14140
Os.53747.1.S1_at--1101--2651Chr12:8024328..8024352 (25 bp)
AAGCCGGCGAAGCTATTTGTCCCAG
LOC_Os12g14140
Os.53747.1.S1_at--441--10811Chr12:8024344..8024368 (25 bp)
TTGTCCCAGCTGATTATCCTCGAAG
LOC_Os12g14140
Os.53747.1.S1_at--1089--4071Chr12:8024364..8024388 (25 bp)
CGAAGCTCCCCGGTGTACGAAGATG
LOC_Os12g14140
Os.53747.1.S1_at--525--2491Chr12:8024395..8024419 (25 bp)
AACAGCACCAGGGAATGTACAGCGT
LOC_Os12g14140
Os.53747.1.S1_at--1018--6011Chr12:8024571..8024595 (25 bp)
GAGAGTTGCACCGATGAGTTTGCAA
LOC_Os12g14140
Os.53747.1.S1_at--309--1371Chr12:8024613..8024637 (25 bp)
AGACCCATGAAGTTTTGCAGGAACA
LOC_Os12g14140
Os.53747.1.S1_at--128--9131Chr12:8024671..8024695 (25 bp)
TGCTGTAGGGCAGATGCAGAATCCA
LOC_Os12g14140
Os.53747.1.S1_at--759--6211Chr12:8024741..8024765 (25 bp)
GAGGCTGTGTGGATCATCTGTTTTT
LOC_Os12g14140
Target Sequence 
GGGACAGTGATCAAATTCAGCTACAATGCAGTGTCTCTTGCACAAGACATGGAGCTACCATTTGCAGCATACGGAACGTC
TCCTCTCAAGCCGGCGAAGCTATTTGTCCCAGCTGATTATCCTCGAAGCTCCCCGGTGTACGAAGATGGTGATGAACAGC
ACCAGGGAATGTACAGCGTGATTTCAGGCATGGTTGACAAGGTGTTCCAGCGTGCCCTGCGTAAACTCCCGGTGCCAATG
TCGATCAGGGACATGGCCCGGCAGTGGGGCATCTCCGTGCGAACGGTCACCAACGGTGGAGGAACGTTCNGCTCCGGGTA
TGGCCAGTGGGAGAGTTGCACCGATGAGTTTGCAAGTCCATAGTCCATGGATAGACCCATGAAGTTTTGCAGGAACAAGT
GATATGAAGAATAATGCTGATCTGCTGTTTTGCTGTAGGGCAGATGCAGAATCCAGTGTGAGTGTTGTGAGAGAATATTT
ATATTTTTGTTATGCATTAAGAGGCTGTGTGGATCATCTGTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53747.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis