Browse Element(s) Details


Os.53757.1.S1_at

Description gb:AK099725.1
DB_XREF= gi:32984934
TID=Os.53757.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.53757 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013089B18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089B18, full insert sequence.
FL= gb:AK099725.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5764011/11Poly polymerase catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57620OsAffx.26646.1.S1_at9/114+34073548..34077199hypothetical protein
LOC_Os04g57620OsAffx.21938.1.S1_at1/114+34073548..34077199hypothetical protein
LOC_Os04g57630Os.49680.1.S1_at11/114+34079714..34083512Leucine Rich Repeat family protein, expressed
LOC_Os04g57640Os.53757.1.S1_at11/114+34095289..34101017Poly polymerase catalytic domain containing protein, expressed
LOC_Os04g57650Os.23656.1.A1_at9/114+34102288..34105685expressed protein
LOC_Os04g57660Os.52985.1.S1_at11/114+34110677..34113143Leucine Rich Repeat family protein, expressed
LOC_Os04g57670Os.53857.1.S1_at11/114+34114436..34117606pentatricopeptide, putative, expressed
LOC_Os04g57670Os.53857.1.S2_at10/114+34114436..34117606pentatricopeptide, putative, expressed
LOC_Os04g57680Os.46068.1.S1_at11/114+34119412..34122849expressed protein
LOC_Os04g57690Os.51223.1.S1_at11/114+34123545..34126566expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000303biological_processresponse to superoxide
GO:0006979biological_processresponse to oxidative stress
GO:0009723biological_processresponse to ethylene stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0009873biological_processethylene mediated signaling pathway
GO:0010193biological_processresponse to ozone
GO:0012501biological_processprogrammed cell death
GO:0005634cellular_componentnucleus
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53757.1.S1_at--566--3991Chr04:34095969..34095993 (25 bp)
CGTGGTTCTCTATCTCTGAGTATTG
LOC_Os04g57640
Os.53757.1.S1_at--12--6091Chr04:34095952..34095976 (25 bp)
GAGTATTGCACCGAATGTCCATGAC
LOC_Os04g57640
Os.53757.1.S1_at--25--5871Chr04:34095909..34095933 (25 bp)
GAGCCTAAGGACGATGCATCTCCAA
LOC_Os04g57640
Os.53757.1.S1_at--1151--6091Chr04:34095678..34095702 (25 bp)
GAGTGCACAGTCAATCGTCTGGGCC
LOC_Os04g57640
Os.53757.1.S1_at--181--10011Chr04:34095644..34095668 (25 bp)
TAGCAGCAGCAATGTCGCTCGGGCA
LOC_Os04g57640
Os.53757.1.S1_at--784--9331Chr04:34095606..34095630 (25 bp)
TCGCCCTATCAACTCTTCGAGAGAA
LOC_Os04g57640
Os.53757.1.S1_at--184--6391Chr04:34095551..34095575 (25 bp)
GATCGCTCTTTGCTTTTTGCTGGGC
LOC_Os04g57640
Os.53757.1.S1_at--819--8651Chr04:34095531..34095555 (25 bp)
TGGGCCGTTCTCTAGTGCTGTACAT
LOC_Os04g57640
Os.53757.1.S1_at--501--8671Chr04:34095502..34095526 (25 bp)
TGTGAATGTTATACACCGTCCTGCC
LOC_Os04g57640
Os.53757.1.S1_at--339--10471Chr04:34095384..34095408 (25 bp)
TTACCTGTCACCTTGTCGACTTGAA
LOC_Os04g57640
Os.53757.1.S1_at--993--5451Chr04:34095362..34095386 (25 bp)
GAACGTGAATCGTTGCACATCCCTG
LOC_Os04g57640
Target Sequence 
CGTGGTTCTCTATCTCTGAGTATTGCACCGAATGTCCATGACCCTCCAGCATCAAGTAAGGAGCCTAAGGACGATGCATC
TCCAATAGCAGGCATGGTCTCAGAAAGCCAGCACTCTCAAGCACCTAATGCAGTCACCAAGGGTACCTAAGGAGTCAAAA
GGCCAGCATTTACAGAGTGGAGTGCACAGTCAATCGTCTGGGCCAGACGATGCTAGCAGCAGCAATGTCGCTCGGGCAGC
TGATACCNTCGTCGCCCTATCAACTCTTCGAGAGAAGGGCAGGTAGATGTTGCAGCCCCTTGTGCTGATCGCTCTTTGCT
TTTTGCTGGGCCGTTCTCTAGTGCTGTACATGTGATGTGAATGTTATACACCGTCCTGCCCAAAAAGCGTTTACCGTCNT
ACCATGGTCCATGGGTCGGTCCGTTNAACTTATAGGTGGTGTAAACCGGTTGGATGGATTCGTTTNTTGTAGGTTACCTG
TCACCTTGTCGACTTGAACGTGAATCGTTGCACATCCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53757.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis