Browse Element(s) Details


Os.53763.1.A1_at

Description gb:AK099816.1
DB_XREF= gi:32985025
TID=Os.53763.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53763 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013099M07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013099M07, full insert sequence.
FL= gb:AK099816.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3834011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38320Os.19296.2.S1_at11/116+22698046..22704079expressed protein
LOC_Os06g38320Os.19296.1.S1_at10/116+22698046..22704079expressed protein
LOC_Os06g38330OsAffx.27987.1.S1_at11/116+22708740..22709114hypothetical protein
LOC_Os06g38340Os.53763.1.A1_at11/116+22709848..22713669Leucine Rich Repeat family protein, expressed
LOC_Os06g38350OsAffx.15818.1.S1_at11/116+22726469..22726801hypothetical protein
LOC_Os06g38360Os.35344.18.S1_x_at7/116+22730001..22732970hypothetical protein
LOC_Os06g38360Os.35344.3.S1_x_at7/116+22730001..22732970hypothetical protein
LOC_Os06g38360OsAffx.22940.5.S1_x_at2/116+22730001..22732970hypothetical protein
LOC_Os06g38370NANA6+22735505..22735855expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53763.1.A1_at--374--6231Chr06:22710280..22710304 (25 bp)
GATGGCTTGAACCTTCACCAATTTG
LOC_Os06g38340
Os.53763.1.A1_at--749--4951Chr06:22710247..22710271 (25 bp)
GCATTTCCTCTGAAGATTGGTCAAA
LOC_Os06g38340
Os.53763.1.A1_at--502--111Chr06:22710223..22710247 (25 bp)
ATTCTAGATCCGAGCATCATGCCAG
LOC_Os06g38340
Os.53763.1.A1_at--899--1611Chr06:22710114..22710138 (25 bp)
AGCTGGTTAAGCTTGGCCTCTTGTG
LOC_Os06g38340
Os.53763.1.A1_at--862--7511Chr06:22710082..22710106 (25 bp)
GTGGCACCTAAAGATCGGCCGACAA
LOC_Os06g38340
Os.53763.1.A1_at--1091--8411Chr06:22710066..22710090 (25 bp)
GGCCGACAATGCAAAGCGTTTACAA
LOC_Os06g38340
Os.53763.1.A1_at--422--10331Chr06:22710015..22710039 (25 bp)
TTTCAGCACTGCATGGTTAAGCCAA
LOC_Os06g38340
Os.53763.1.A1_at--912--7931Chr06:22709989..22710013 (25 bp)
GGATTATTTCTTTTATGTCGCACAT
LOC_Os06g38340
Os.53763.1.A1_at--595--8711Chr06:22709974..22709998 (25 bp)
TGTCGCACATGCTACTAGTACATTT
LOC_Os06g38340
Os.53763.1.A1_at--865--4931Chr06:22709938..22709962 (25 bp)
GCTTGTGATATGTCATTTTCTCCTC
LOC_Os06g38340
Os.53763.1.A1_at--354--10591Chr06:22709921..22709945 (25 bp)
TTCTCCTCTTCAGTCTTACTAGTGA
LOC_Os06g38340
Target Sequence 
GATGGCTTGAACCTTCACCAATTTGCCAAGGAGGCATTTCCTCTGAAGATTGGTCAAATTCTAGATCCGAGCATCATGCC
AGATTATGAGAACGAAGACAATGATGCAAACAATGATCTAGACCATGATAATTGTTTGATGGATGGAATGCTGAACTGTG
TCACGAAGCTGGTTAAGCTTGGCCTCTTGTGCTCTGCAGTGGCACCTAAAGATCGGCCGACAATGCAAAGCGTTTACAAG
GAAGTCGCTGCAATCAAAGAAGAATTTTCAGCACTGCATGGTTAAGCCAAAGGATTATTTCTTTTATGTCGCACATGCTA
CTAGTACATTTTTCTTGTTTGAGCTTGTGATATGTCATTTTCTCCTCTTCAGTCTTACTAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53763.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis