Browse Element(s) Details


Os.53780.1.S1_at

Description gb:AK099968.1
DB_XREF= gi:32985177
TID=Os.53780.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53780 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013127I09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013127I09, full insert sequence.
FL= gb:AK099968.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4950011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49430OsAffx.4128.1.S1_at11/114+29274839..29279862Regulator of chromosome condensation family protein, expressed
LOC_Os04g49440OsAffx.14343.1.S1_at11/114+29280376..29281215RNA recognition motif, putative, expressed
LOC_Os04g49450Os.5335.1.S1_at11/114+29281866..29284686myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os04g49460Os.54481.2.S1_at8/114+29288564..29289733Protein kinase domain containing protein, expressed
LOC_Os04g49480OsAffx.14344.1.S1_at11/114+29294790..29295632Legume lectins beta domain containing protein
LOC_Os04g49490OsAffx.14345.1.S1_at11/114+29296169..29298855protein phosphatase 2C family protein, putative, expressed
LOC_Os04g49500Os.53780.1.S1_at11/114+29303288..29308363U-box domain containing protein, expressed
LOC_Os04g49510Os.282.2.S1_a_at11/114+29312147..29316668Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os04g49510Os.282.1.S1_a_at11/114+29312147..29316668Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os04g49520Os.55596.1.S1_at10/114+29316733..29319450PPR868-14, putative, expressed
LOC_Os04g49530Os.47740.1.S1_at11/114+29319648..29323458expressed protein
LOC_Os04g49540Os.11660.1.S1_at11/114+29322890..29325612expressed protein
LOC_Os04g49550OsAffx.26540.1.S1_s_at11/114+29333054..29334019expressed protein
LOC_Os04g49550Os.54859.1.S1_at10/114+29333054..29334019expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53780.1.S1_at--774--7231Chr04:29307732..29307756 (25 bp)
GTCCGTGACACTGTACAACTTCAGC
LOC_Os04g49500
Os.53780.1.S1_at--356--6991Chr04:29308045..29308069 (25 bp)
GTACGCTACATGCAAGTCGCCGGAG
LOC_Os04g49500
Os.53780.1.S1_at--849--1651Chr04:29308068..29308092 (25 bp)
AGCGCCTCTCGTGTTCGTGGAAGAT
LOC_Os04g49500
Os.53780.1.S1_at--1073--7991Chr04:29308098..29308122 (25 bp)
GGATGGAGCCCGCTGATTTTCTTGC
LOC_Os04g49500
Os.53780.1.S1_at--477--3051Chr04:29308139..29308163 (25 bp)
AATCGTCTCAGCTCCAAACAGTTAT
LOC_Os04g49500
Os.53780.1.S1_at--296--10431Chr04:29308160..29308184 (25 bp)
TTATCGGACAGAGACGGCACGCTAT
LOC_Os04g49500
Os.53780.1.S1_at--579--9951Chr04:29308217..29308241 (25 bp)
TACCTTGTTTAGTCGTTTTCTCTCT
LOC_Os04g49500
Os.53780.1.S1_at--350--10611Chr04:29308244..29308268 (25 bp)
TTGGGTAACATATTCGACGAGCCGG
LOC_Os04g49500
Os.53780.1.S1_at--309--5871Chr04:29308262..29308286 (25 bp)
GAGCCGGCCGCTGTGAATATAATTT
LOC_Os04g49500
Os.53780.1.S1_at--394--6551Chr04:29308287..29308311 (25 bp)
GATTATGCCTGACGGAGTCCTTGAC
LOC_Os04g49500
Os.53780.1.S1_at--232--7271Chr04:29308303..29308327 (25 bp)
GTCCTTGACGTTTGTACTTCTGAAT
LOC_Os04g49500
Target Sequence 
GTCCGTGACACTGTACAACTTCAGCAAGATCCCAGACTGCAGGGCCTTGCTGATGCTGCTGGCTGACGGCCTTCGCGATC
ACCTGGTCGAGCTCGCGGAGCTGACATGGACGGCCGGTCAACTGATCACCGAGCTCCAAGAGTGACGTTAACCTCCGCCA
CGACGCCCAGCGTACGCTACATGCAAGTCGCCGGAGCGCCTCTCGTGTTCGTGGAAGATTCAGCGGATGGAGCCCGCTGA
TTTTCTTGCCCCCTTCAGAGTTCAGAATCGTCTCAGCTCCAAACAGTTATCGGACAGAGACGGCACGCTATGTAAATGTT
GATGCGTACGGTAGATTATACTATACCTTGTTTAGTCGTTTTCTCTCTTCTTGGGTAACATATTCGACGAGCCGGCCGCT
GTGAATATAATTTGATTATGCCTGACGGAGTCCTTGACGTTTGTACTTCTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53780.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis