Browse Element(s) Details


Os.53826.1.S1_at

Description gb:AK100285.1
DB_XREF= gi:32985494
TID=Os.53826.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53826 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023075D23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075D23, full insert sequence.
FL= gb:AK100285.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0902011/11Argonaute-like protein At2g27880, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08990OsAffx.16162.1.S1_at11/117+4676105..4676369hypothetical protein
LOC_Os07g09000Os.19410.1.S1_at11/117+4680780..4685952transducin family protein, putative, expressed
LOC_Os07g09010Os.49506.1.S1_at11/117+4695537..4697831nodulin family protein, putative, expressed
LOC_Os07g09020Os.53826.1.S1_at11/117+4701278..4710817Argonaute-like protein At2g27880, putative, expressed
LOC_Os07g09030NANA7+4716943..4717257hypothetical protein
LOC_Os07g09040OsAffx.16163.1.S1_at11/117+4720067..4725266peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os07g09040OsAffx.16163.1.S1_x_at11/117+4720067..4725266peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os07g09050Os.51833.1.S1_x_at11/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09050Os.51833.3.S1_at11/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09050Os.51833.2.S1_at10/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09050OsAffx.1782.1.S1_x_at1/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09050OsAffx.27499.3.S1_x_at1/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09060Os.1984.1.S1_at11/117+4732926..4739754methylmalonate-semialdehyde dehydrogenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009965biological_processleaf morphogenesis
GO:0016441biological_processposttranscriptional gene silencing
GO:0035195biological_processmiRNA-mediated gene silencing
GO:0040034biological_processregulation of development, heterochronic
GO:0005737cellular_componentcytoplasm
GO:0003743molecular_functiontranslation initiation factor activity
GO:0004521molecular_functionendoribonuclease activity
GO:0035197molecular_functionsiRNA binding
GO:0035198molecular_functionmiRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53826.1.S1_at--125--731Chr07:4702623..4702841 (25 bp)
ATGTTCGTCCAGGAACCGTGGTTGA
LOC_Os07g09020
Os.53826.1.S1_at--816--2071Chr07:4702593..4702617 (25 bp)
ACATTTGCCACCCTAGTGAGTTCGA
LOC_Os07g09020
Os.53826.1.S1_at--315--5431Chr07:4702380..4702404 (25 bp)
GAACCGTTTTAGTGCCGATCAGCTG
LOC_Os07g09020
Os.53826.1.S1_at--1024--4751Chr07:4702359..4702383 (25 bp)
GCTGCAGATGCTCACTTACAATTTG
LOC_Os07g09020
Os.53826.1.S1_at--461--211Chr07:4702251..4702363 (25 bp)
ATTTGTGTTACACCTACGCTCGATG
LOC_Os07g09020
Os.53826.1.S1_at--653--1531Chr07:4701581..4701605 (25 bp)
AGCATTCCGGGCGAGGTACTACGAT
LOC_Os07g09020
Os.53826.1.S1_at--938--5751Chr07:4701442..4701466 (25 bp)
GACGTGATGTTCTACTGCTGATCGA
LOC_Os07g09020
Os.53826.1.S1_at--904--5231Chr07:4701419..4701443 (25 bp)
GAATCGGCGCCTAGCTTGGGTTTTA
LOC_Os07g09020
Os.53826.1.S1_at--964--2391Chr07:4701389..4701413 (25 bp)
AAACATTTTGTTGGTCGCTCGTCAG
LOC_Os07g09020
Os.53826.1.S1_at--240--9351Chr07:4701375..4701399 (25 bp)
TCGCTCGTCAGTATTCATTCAGGCT
LOC_Os07g09020
Os.53826.1.S1_at--519--1111Chr07:4701347..4701371 (25 bp)
AGTGTACTGTGCTATCTCTGAAATT
LOC_Os07g09020
Target Sequence 
ATGTTCGTCCAGGAACCGTGGTTGACACTAACATTTGCCACCCTAGTGAGTTCGACTTCTACCTGTGCAGCCATGCCGGA
ATCCAGGGAACAAGCAGACCAACCCACTACCACGTTCTCCATGACGAGAACCGTTTTAGTGCCGATCAGCTGCAGATGCT
CACTTACAATTTGTGTTACACCTACGCTCGATGCACCCGGTCTGTCTCTGTTGTCCCTCCAGCCTACTACGCTCACCTGG
CAGCATTCCGGGCGAGGTACTACGATGAGCCCCCCGCCATGGACGGAGCTTCGTCGGTCGGCAGCGGCGGCAACCAGGCG
GCGGCCGGCGGCCAGCCACCGGCGGTGCGCCGCCTCCCGCAGATCAAGGAGAACGTCAAGGACGTGATGTTCTACTGCTG
ATCGAATCGGCGCCTAGCTTGGGTTTTAACTACAAACATTTTGTTGGTCGCTCGTCAGTATTCATTCAGGCTGTTAGTGT
ACTGTGCTATCTCTGAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53826.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis