Browse Element(s) Details


Os.53832.1.S1_at

Description gb:AK100325.1
DB_XREF= gi:32985534
TID=Os.53832.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53832 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023079J09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023079J09, full insert sequence.
FL= gb:AK100325.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1568010/11expressed protein
LOC_Os01g157008/11transposon protein, putative, Pong sub-class
LOC_Os06g295804/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15640Os.4387.1.S1_at10/111+8789456..8794160No apical meristem protein, expressed
LOC_Os01g15650NANA1+8802509..8805319transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g15660Os.27385.2.S1_x_at11/111+8806191..8809898NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g15660Os.27385.3.S1_at9/111+8806191..8809898NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g15660Os.45507.1.S1_at1/111+8806191..8809898NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g15669OsAffx.11065.1.S1_x_at11/111+8813692..8815120Transferase family protein
LOC_Os01g15669OsAffx.11065.1.S1_at11/111+8813692..8815120Transferase family protein
LOC_Os01g15680Os.53832.1.S1_at10/111+8817938..8819411expressed protein
LOC_Os01g15680OsAffx.11065.1.S1_at3/111+8817938..8819411expressed protein
LOC_Os01g15680OsAffx.11065.1.S1_x_at2/111+8817938..8819411expressed protein
LOC_Os01g15680OsAffx.27865.1.S1_x_at1/111+8817938..8819411expressed protein
LOC_Os01g15690Os.35046.2.S1_x_at11/111+8819792..8824980retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g15690Os.35046.1.S1_at9/111+8819792..8824980retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g15700OsAffx.27865.1.S1_x_at10/111+8826346..8830871transposon protein, putative, Pong sub-class
LOC_Os01g15700Os.53832.1.S1_at8/111+8826346..8830871transposon protein, putative, Pong sub-class
LOC_Os01g15700OsAffx.9725.1.S1_at3/111+8826346..8830871transposon protein, putative, Pong sub-class
LOC_Os01g15700OsAffx.27865.2.S1_at1/111+8826346..8830871transposon protein, putative, Pong sub-class
LOC_Os01g15709OsAffx.11065.1.S1_at11/111+8832376..8833804Transferase family protein
LOC_Os01g15709OsAffx.11065.1.S1_x_at11/111+8832376..8833804Transferase family protein
LOC_Os01g15720NANA1+8837748..8843254Tobamovirus movement protein containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53832.1.S1_at--430--9451Chr01:8819045..8819069 (25 bp)
TCGGCGTGCGCCTGTACTACATCGA
LOC_Os01g15680
Os.53832.1.S1_at--110--4531Chr01:8818749..8818866 (25 bp)
GCCGCGATGCGCAGAACATGCTCTG
LOC_Os01g15680
Os.53832.1.S1_at--135--5194Chr01:8829261..8829285 (25 bp)
GCAATGATCCTGCTATCAAGGGTCT
LOC_Os01g15700
Os.53832.1.S1_at--668--371NONE
ATCAAGGGTCTATCTTCGATGGAGA
NONE
Os.53832.1.S1_at--488--5594Chr01:8829298..8829322 (25 bp)
GAAATCAGTCTATCTTCGATGAATA
LOC_Os01g15700
Os.53832.1.S1_at--319--3075Chr01:8829323..8829347 (25 bp)
AATCATTCTCACTTGTTGGACAGCA
LOC_Os01g15700
Os.53832.1.S1_at--821--7015Chr01:8829357..8829381 (25 bp)
GTACTTTTGCTTAATGCCCTATTGT
LOC_Os01g15700
Os.53832.1.S1_at--316--3035Chr01:8829369..8829393 (25 bp)
AATGCCCTATTGTTGATGTGACTTT
LOC_Os01g15700
Os.53832.1.S1_at--494--5634Chr01:8829388..8829412 (25 bp)
GACTTTTGGATCTGTAAACCGTTAT
LOC_Os01g15700
Os.53832.1.S1_at--257--6513Chr01:8829462..8829486 (25 bp)
GATATCTTTCGTTACCATGTCCTTT
LOC_Os01g15700
Os.53832.1.S1_at--1154--2753Chr01:8829491..8829515 (25 bp)
AAGACTTGTGTTCGGACTGGTATGA
LOC_Os01g15700
Target Sequence 
TCGGCGTGCGCCTGTACTACATCGAGGCGGCGGACATCGCCCGGCTACGCGAGCAGGCGCGGGCGACGCGGGTACAGGCG
GTGTCCGCGTACCTGTGGAAGGCCCTCGCCGCGGTGGTGGGCTCGCGCGACGCGCGCTGCCGCATGGTGTGGTGGGTGGA
CGGCCGCCGGCGTCTCACTCTCTCCTCCTCGCCGGAGCTCCGCGCCGCGATGCGCAGAACATGCTCTGCTCAGTATGTCC
AAATCATGGTGCTGCACTTCTCAAAGGTTGATCATAGCTCAGGCAATGGTAATATGATGCAATGATCCTGCTATCAAGGG
TCTATCTTCGATGGAGAAATCAGTCTATCTTCGATGAATAAATCATTCTCACTTGTTGGACAGCATATTTATATGTACTT
TTGCTTAATGCCCTATTGTTGATGTGACTTTTGGATCTGTAAACCGTTATGTTTATTTTGCTTTATCCTCTATTACCTTG
TCAGTTCTTTGGAACTACAGATATCTTTCGTTACCATGTCCTTTTGTTAAGACTTGTGTTCGGACTGGTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53832.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis