Browse Element(s) Details


Os.53851.1.S1_at

Description gb:AK100620.1
DB_XREF= gi:32985829
TID=Os.53851.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53851 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023108F15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023108F15, full insert sequence.
FL= gb:AK100620.1 gb:AK100399.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1409011/11Armadillo/beta-catenin-like repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14060OsAffx.19542.3.S1_x_at6/113+7615663..7620799retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g14060OsAffx.21754.1.S1_x_at1/113+7615663..7620799retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g14070NANA3+7624932..7625150hypothetical protein
LOC_Os03g14080Os.54020.2.S1_x_at11/113+7625702..7629611AUX1 protein, putative, expressed
LOC_Os03g14080Os.54020.1.S1_at10/113+7625702..7629611AUX1 protein, putative, expressed
LOC_Os03g14080OsAffx.7026.1.S1_x_at2/113+7625702..7629611AUX1 protein, putative, expressed
LOC_Os03g14090Os.53851.1.S1_at11/113+7635251..7637529Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os03g14100NANA3+7643247..7643624hypothetical protein
LOC_Os03g14110OsAffx.12853.1.S1_at11/113+7646975..7649784expressed protein
LOC_Os03g14120Os.51228.1.S1_at11/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14120Os.51228.3.S1_at11/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14120Os.51228.3.S1_x_at10/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14120Os.22668.1.A1_at9/113+7650654..7655907dihydrodipicolinate reductase family protein, putative, expressed
LOC_Os03g14130Os.51228.2.A1_at11/113+7654818..7656178proline-rich protein, putative, expressed
LOC_Os03g14140Os.7578.1.S1_at10/113+7656746..7658183expressed protein
LOC_Os03g14150Os.6021.1.S1_at11/113+7660578..7661891expressed protein
LOC_Os03g14160OsAffx.12854.1.S1_at11/113+7662468..7663255hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53851.1.S1_at--469--9031Chr03:7635774..7635798 (25 bp)
TGCACGTGAGCCACTGCAAGGCCAT
LOC_Os03g14090
Os.53851.1.S1_at--87--9611Chr03:7635678..7635702 (25 bp)
TCATACTGCTCTGCTACATTGCGCT
LOC_Os03g14090
Os.53851.1.S1_at--850--2071Chr03:7635663..7635687 (25 bp)
ACATTGCGCTGCACGTCCCGGAGAA
LOC_Os03g14090
Os.53851.1.S1_at--1009--2711Chr03:7635589..7635613 (25 bp)
AAGCAGCCACACATGGTGCAGGACC
LOC_Os03g14090
Os.53851.1.S1_at--469--2891Chr03:7635535..7635559 (25 bp)
AAGGGTCGGCTCGAGCTCTTCCAGT
LOC_Os03g14090
Os.53851.1.S1_at--798--7371Chr03:7635497..7635521 (25 bp)
GTGATCAACTGGTGACGGCATTGGC
LOC_Os03g14090
Os.53851.1.S1_at--343--3931Chr03:7635473..7635497 (25 bp)
CGGCGATCACCGGAGTTCAAGAAGA
LOC_Os03g14090
Os.53851.1.S1_at--735--6071Chr03:7635447..7635471 (25 bp)
GAGTTAGCCCTCGATTTACTGCAAA
LOC_Os03g14090
Os.53851.1.S1_at--620--7211Chr03:7635406..7635430 (25 bp)
GTCGATTGTTCATTAGTAGTTCCAA
LOC_Os03g14090
Os.53851.1.S1_at--451--10171Chr03:7635351..7635375 (25 bp)
TATCACACCTTCAATTTGTTGCTTT
LOC_Os03g14090
Os.53851.1.S1_at--424--8011Chr03:7635291..7635315 (25 bp)
GGAGGCGCTTTTCATGTATATAACA
LOC_Os03g14090
Target Sequence 
TGCACGTGAGCCACTGCAAGGCCATCGTCGACGGCGGCGGCGCGCGGCACCTCGTCCAGCTCGTCTACCTGGGTGACCAG
GTGCAGATCGAGGCGCTCATACTGCTCTGCTACATTGCGCTGCACGTCCCGGAGAACGAGGAGCTCGCGCAGGCCGGAGT
TCTCGCCGTGCTCCTCTGGGCGTCCAAGCAGCCACACATGGTGCAGGACCTGCGCGTCGACGCGCTGCTCCCGGATGCCA
AGGGTCGGCTCGAGCTCTTCCAGTCCAGAGCATCTCGGTGATCAACTGGTGACGGCATTGGCGGCGATCACCGGAGTTCA
AGAAGATGAGTTAGCCCTCGATTTACTGCAAAATCGAAGTAGATCTATGTCGATTGTTCATTAGTAGTTCCAAATTCTTG
TTGTTTTGTTGTTAGAATGTATATATCACACCTTCAATTTGTTGCTTTGTCTCAAAGAAATTGCTCGGTGTATTGATTAG
TATGGAGGCGCTTTTCATGTATATAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53851.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis