Browse Element(s) Details


Os.53870.1.A1_at

Description gb:AK100529.1
DB_XREF= gi:32985738
TID=Os.53870.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53870 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023101G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023101G11, full insert sequence.
FL= gb:AK100529.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1658010/11Endonuclease III-like protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16540Os.50519.1.S1_at11/1111+9134491..9151172TPR Domain containing protein, expressed
LOC_Os11g16540Os.46636.1.S1_x_at1/1111+9134491..9151172TPR Domain containing protein, expressed
LOC_Os11g16550Os.7140.1.S1_at11/1111+9155231..9156467GUN4-like family protein, expressed
LOC_Os11g16560Os.56238.1.S1_at1/1111+9157312..9162128expressed protein
LOC_Os11g16570OsAffx.31002.1.S1_at11/1111+9162805..9163792hypothetical protein
LOC_Os11g16580Os.53870.1.A1_at10/1111+9165591..9170671Endonuclease III-like protein 1, putative, expressed
LOC_Os11g16590Os.52841.1.S1_at11/1111+9171035..9176539ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed
LOC_Os11g16600OsAffx.18881.1.S1_at10/1111+9181792..9183149hypothetical protein
LOC_Os11g16610NANA11+9185974..9190784retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g16619NANA11+9192653..9192997NA

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Gene Ontology Classification
GO idTypeName
GO:0006284biological_processbase-excision repair
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53870.1.A1_at--1111--10831Chr11:9169803..9169827 (25 bp)
TTGGTCCTAAAATGGCTCATCTGGT
LOC_Os11g16580
Os.53870.1.A1_at--903--1071Chr11:9169932..9169956 (25 bp)
AGGGAATTTGCGTTGACACTCATGT
LOC_Os11g16580
Os.53870.1.A1_at--92--9871Chr11:9169956..9169980 (25 bp)
TACATCGCATATCTAACCGTCTTGG
LOC_Os11g16580
Os.53870.1.A1_at--1042--7591Chr11:9170173..9170197 (25 bp)
GGGAACCTATCAACCCATTACTGGT
LOC_Os11g16580
Os.53870.1.A1_at--97--7611Chr11:9170370..9170394 (25 bp)
GGGCAAACAATCTGTACTCCACTTA
LOC_Os11g16580
Os.53870.1.A1_at--395--3471Chr11:9170506..9170530 (25 bp)
CAGGGATGCCTTGTGTACTTTGTGT
LOC_Os11g16580
Os.53870.1.A1_at--383--10411Chr11:9170538..9170562 (25 bp)
TTATTTACTGACCTGCTAGTGCTGG
LOC_Os11g16580
Os.53870.1.A1_at--95--4871Chr11:9170552..9170576 (25 bp)
GCTAGTGCTGGAATGCTCTTCTAAA
LOC_Os11g16580
Os.53870.1.A1_at--71--191Chr11:9170587..9170611 (25 bp)
ATTTATTGCCTGGATGACCTTCCTG
LOC_Os11g16580
Os.53870.1.A1_at--1161--9251Chr11:9170607..9170631 (25 bp)
TCCTGCAGCCATCTATCATTTTGTA
LOC_Os11g16580
Os.53870.1.A1_at--411--7851Chr11:9170679..9170705 (25 bp)
GGTAGGGACATTGATCTTGCCAGTT
NONE
Target Sequence 
TTGGTCCTAAAATGGCTCATCTGGTGATGAGCATTGCATGGAAGAATACTCAGGGAATTTGCGTTGACACTCATGTACAT
CGCATATCTAACCGTCTTGGGTGGGTTTTCCGAGAGGGAACAAAACAGAAAACTACAACACCCGAGCAAACAAGAATGTC
TCTTGAGAAGTGGCTACCAAAGGATGAGTGGGAACCTATCAACCCATTACTGGTTGGATTTGGGCAAACAATCTGTACTC
CACTTAGGCCCAAATGTGACATGTGCGGCATAAACAACATCTGCCCTTCAGCTTTCAAGGAATCATCAAGCCCAAATCCA
AAGCAAAAGAAAATGAGGTCATCTTAGAACTTTTTGGCAGGGATGCCTTGTGTACTTTGTGTACATGCATTATTTACTGA
CCTGCTAGTGCTGGAATGCTCTTCTAAAAGGTTGGCATATTTATTGCCTGGATGACCTTCCTGCAGCCATCTATCATTTT
GTATAGCCATTATGTAGCATTTTGTATAGCCGTAATCTATTGAGACAATGGGTAGGGACATTGATCTTGCCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53870.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis