Browse Element(s) Details


Os.5389.1.S1_at

Description gb:AK066370.1
DB_XREF= gi:32976388
TID=Os.5389.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5389 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013063J21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013063J21, full insert sequence.
FL= gb:AK066370.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5696911/11hypothetical protein
LOC_Os01g5694911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56930Os.19849.1.S1_at10/111+33213733..33219492aspartyl protease family protein, putative, expressed
LOC_Os01g56940Os.47361.1.S1_at10/111+33220231..33226565XPG I-region family protein, expressed
LOC_Os01g56949Os.5389.1.S1_s_at11/111+33227739..33229476expressed protein
LOC_Os01g56949Os.5389.1.S1_at11/111+33227739..33229476expressed protein
LOC_Os01g56960OsAffx.23812.1.S1_x_at11/111+33230123..33232511expressed protein
LOC_Os01g56969Os.5389.1.S1_at11/111+33234091..33235585hypothetical protein
LOC_Os01g56969Os.5389.1.S1_s_at4/111+33234091..33235585hypothetical protein
LOC_Os01g56980OsAffx.23812.1.S1_x_at11/111+33237110..33252182LOC495012 protein, putative, expressed
LOC_Os01g56990Os.16916.1.S1_at9/111+33256049..33259634Regulator of chromosome condensation family protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5389.1.S1_at--805--10492Chr01:33235218..33235242 (25 bp)
TTGCACTTTATTTTAGTCGAAATGC
LOC_Os01g56969
Os.5389.1.S1_at--906--10192Chr01:33235226..33235250 (25 bp)
TATTTTAGTCGAAATGCATCTGCAC
LOC_Os01g56969
Os.5389.1.S1_at--400--10372Chr01:33235228..33235252 (25 bp)
TTTTAGTCGAAATGCATCTGCACTT
LOC_Os01g56969
Os.5389.1.S1_at--1136--632Chr01:33235239..33235263 (25 bp)
ATGCATCTGCACTTTGGTTGTGCAG
LOC_Os01g56969
Os.5389.1.S1_at--939--4972Chr01:33235241..33235265 (25 bp)
GCATCTGCACTTTGGTTGTGCAGCA
LOC_Os01g56969
Os.5389.1.S1_at--545--5112Chr01:33235247..33235271 (25 bp)
GCACTTTGGTTGTGCAGCAGGCACA
LOC_Os01g56969
Os.5389.1.S1_at--968--3672Chr01:33235250..33235274 (25 bp)
CTTTGGTTGTGCAGCAGGCACAAAA
LOC_Os01g56969
Os.5389.1.S1_at--186--5512Chr01:33235281..33235305 (25 bp)
GAACAAAATTTCTAACAGATTCAGG
LOC_Os01g56969
Os.5389.1.S1_at--969--7612Chr01:33235305..33235329 (25 bp)
GGGAAGCTATAGCATGCTACACATG
LOC_Os01g56969
Os.5389.1.S1_at--872--5392Chr01:33235307..33235331 (25 bp)
GAAGCTATAGCATGCTACACATGTT
LOC_Os01g56969
Os.5389.1.S1_at--75--1572Chr01:33235309..33235333 (25 bp)
AGCTATAGCATGCTACACATGTTTT
LOC_Os01g56969
Target Sequence 
TTGCACTTTATTTTAGTCGAAATGCATCTGCACTTTGGTTGTGCAGCAGGCACAAAATAAACAGAACAAAATTTCTAACA
GATTCAGGGGAAGCTATAGCATGCTACACATGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5389.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis