Browse Element(s) Details


Os.53891.1.S1_at

Description gb:AK100657.1
DB_XREF= gi:32985866
TID=Os.53891.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53891 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023111H13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023111H13, full insert sequence.
FL= gb:AK100657.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1189010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g11860OsAffx.17852.1.S1_at11/119+6646197..6648197hypothetical protein
LOC_Os09g11870OsAffx.24317.6.S1_x_at11/119+6650255..6655572transposon protein, putative, unclassified
LOC_Os09g11870OsAffx.28002.1.A1_at10/119+6650255..6655572transposon protein, putative, unclassified
LOC_Os09g11870Os.3920.1.S1_at2/119+6650255..6655572transposon protein, putative, unclassified
LOC_Os09g11880OsAffx.19405.1.S1_at9/119+6664743..6665826hypothetical protein
LOC_Os09g11890Os.53891.1.S1_at10/119+6672037..6677975expressed protein
LOC_Os09g11900Os.43203.1.S1_x_at10/119+6686847..6690306expressed protein
LOC_Os09g11910OsAffx.9815.1.S1_at9/119+6693217..6697761transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g11920OsAffx.17654.3.S1_x_at11/119+6702072..6704049transposon protein, putative, unclassified
LOC_Os09g11920OsAffx.17654.2.S1_at8/119+6702072..6704049transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53891.1.S1_at--1159--1831NONE
ACGCAATGACGCCAAGATTTCTCCA
NONE
Os.53891.1.S1_at--109--5131Chr09:6677570..6677594 (25 bp)
GCACAGGAGTGTGACCTTGCAGTTT
LOC_Os09g11890
Os.53891.1.S1_at--366--3631Chr09:6677585..6677609 (25 bp)
CTTGCAGTTTCCAGCCATTGATTAA
LOC_Os09g11890
Os.53891.1.S1_at--677--3391Chr09:6677616..6677640 (25 bp)
CAGCGGGCTTTCTTGTTTGGACATA
LOC_Os09g11890
Os.53891.1.S1_at--380--5071Chr09:6677653..6677677 (25 bp)
GCAGCTGCCAGCGATCACCAAGGAA
LOC_Os09g11890
Os.53891.1.S1_at--840--771Chr09:6677682..6677706 (25 bp)
ATGTCCTCCAAGCAATTGATCACGG
LOC_Os09g11890
Os.53891.1.S1_at--1120--6431Chr09:6677699..6677723 (25 bp)
GATCACGGAAGCAACCTACGAGTTA
LOC_Os09g11890
Os.53891.1.S1_at--902--71Chr09:6677762..6677786 (25 bp)
ATTCCTATGGCTTTTCTCTAACTTG
LOC_Os09g11890
Os.53891.1.S1_at--1015--3231Chr09:6677829..6677853 (25 bp)
CAAGCCCACATTTTCATTGAGGAGG
LOC_Os09g11890
Os.53891.1.S1_at--762--6791Chr09:6677893..6677917 (25 bp)
GTTATGCCATATGCGTCTGGTTTTG
LOC_Os09g11890
Os.53891.1.S1_at--649--5451Chr09:6677921..6677945 (25 bp)
GAACGCACCGCTTCTACTGAAATTA
LOC_Os09g11890
Target Sequence 
ACGCAATGACGCCAAGATTTCTCCAAGACAGAAAAGCACTACAGCACAGGAGTGTGACCTTGCAGTTTCCAGCCATTGAT
TAATTCTATCAGCGGGCTTTCTTGTTTGGACATAACATTCCAAGAAGCAGCTGCCAGCGATCACCAAGGAACCAAATGTC
CTCCAAGCAATTGATCACGGAAGCAACCTACGAGTTACAATGGGTAGCCCATCCACTGGAATCCTGCAGCTTCCCATTCC
TATGGCTTTTCTCTAACTTGCACCAGAGAACGCACAACCACGACAGACTAAATTGAATTACTCAAGCCCACATTTTCATT
GAGGAGGTATAGAGAGCTAGCGTGTGTTGTGAGCAAGCAGAACAATGTTATGCCATATGCGTCTGGTTTTGTAGGAACGC
ACCGCTTCTACTGAAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53891.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis