Browse Element(s) Details


Os.53894.1.S1_x_at

Description gb:AK100672.1
DB_XREF= gi:32985881
TID=Os.53894.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53894 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023112N09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023112N09, full insert sequence.
FL= gb:AK100672.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5212011/11Potassium transporter 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52074Os.23898.1.S1_at11/114+30708554..30715020expressed protein
LOC_Os04g52090OsAffx.14373.1.S1_s_at11/114+30720101..30721198AP2 domain containing protein, expressed
LOC_Os04g52100Os.10727.1.S1_at11/114+30726099..30729615Methionine aminopeptidase, putative, expressed
LOC_Os04g52110Os.53526.1.S1_at11/114+30731863..30733038Late embryogenesis abundant protein, expressed
LOC_Os04g52120Os.53894.1.S1_x_at11/114+30733425..30738538Potassium transporter 7, putative, expressed
LOC_Os04g52130Os.17919.1.S1_at11/114+30742528..30746340Coproporphyrinogen III oxidase, chloroplast precursor, putative, expressed
LOC_Os04g52140Os.14963.1.S1_at11/114+30755091..30760771Protein kinase domain containing protein, expressed
LOC_Os04g52152NANA4+30763430..30764984NA

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0016020cellular_componentmembrane
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53894.1.S1_x_at--108--8551Chr04:30733962..30733986 (25 bp)
TGGAGCTCGCATTCATCAGGCAGGC
LOC_Os04g52120
Os.53894.1.S1_x_at--793--8531Chr04:30733928..30733952 (25 bp)
TGGAGCCGTCTATCTCATTGACAAC
LOC_Os04g52120
Os.53894.1.S1_x_at--815--2611Chr04:30733906..30733930 (25 bp)
AACCCCATCGTCAAAGCCAGGAAGA
LOC_Os04g52120
Os.53894.1.S1_x_at--123--2391Chr04:30733853..30733877 (25 bp)
AAACTACTTCTTCGCATTCTTGAGG
LOC_Os04g52120
Os.53894.1.S1_x_at--188--111Chr04:30733838..30733862 (25 bp)
ATTCTTGAGGAACAACTGCCGCAGG
LOC_Os04g52120
Os.53894.1.S1_x_at--643--7211Chr04:30733805..30733829 (25 bp)
GTCGATGAGCATTCCACACACAAAT
LOC_Os04g52120
Os.53894.1.S1_x_at--949--4571Chr04:30733769..30733793 (25 bp)
GCGCTTGACCTCTTATGTTTGATTG
LOC_Os04g52120
Os.53894.1.S1_x_at--753--6851Chr04:30733753..30733777 (25 bp)
GTTTGATTGCCGAATGGTACCCTTT
LOC_Os04g52120
Os.53894.1.S1_x_at--288--6671Chr04:30733641..30733665 (25 bp)
GTTGCACCTCTAGCATTATTCAGGA
LOC_Os04g52120
Os.53894.1.S1_x_at--794--3031Chr04:30733595..30733619 (25 bp)
AATCCACGTCTCCTGTAATTTTTGT
LOC_Os04g52120
Os.53894.1.S1_x_at--62--5371Chr04:30733485..30733509 (25 bp)
GAAGAGATTCTTTTGCCATGTACTA
LOC_Os04g52120
Target Sequence 
TGGAGCTCGCATTCATCAGGCAGGCCAAGCAATCTGGAGCCGTCTATCTCATTGACAACCCCATCGTCAAAGCCAGGAAG
AATTCCTGGTTCTTCAAGAAGCTGATCATAAACTACTTCTTCGCATTCTTGAGGAACAACTGCCGCAGGGCGATGATGTC
GATGAGCATTCCACACACAAATGTGATGCAGGTGCGCTTGACCTCTTATGTTTGATTGCCGAATGGTACCCTTTCCGACA
CCCTTTTGTTTTGTTCGTTGCTATCAAGTAGAGATAACACTAACTAGAGAAGAATGGCATTGCAAAGAGAAGAAGAGTAT
AGTTGCACCTCTAGCATTATTCAGGAAGGGATAACATCTGTTTTAGGAATCCACGTCTCCTGTAATTTTTGTACAATTGC
GAAATGTATCTGCAAGCAAATGTTGTGTAGCAAACACATCAGAGTGTGGTGAGCTAACATGTGTATTCCTGTGTGAGGAA
GAGATTCTTTTGCCATGTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53894.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis