Browse Element(s) Details


Os.53925.1.A1_at

Description gb:AK100861.1
DB_XREF= gi:32986070
TID=Os.53925.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53925 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023123N15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023123N15, full insert sequence.
FL= gb:AK100861.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4715011/11Subtilisin N-terminal Region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47110OsAffx.14307.1.S1_at11/114+27761777..27762956hypothetical protein
LOC_Os04g47120Os.17954.1.S1_at11/114+27765032..27771465Acyl-CoA thioesterase family protein, expressed
LOC_Os04g47130OsAffx.26496.1.S1_at10/114+27771819..27773295expressed protein
LOC_Os04g47140Os.56959.1.S1_at11/114+27775810..27776728expressed protein
LOC_Os04g47140Os.51447.1.S1_s_at1/114+27775810..27776728expressed protein
LOC_Os04g47150Os.53925.1.A1_at11/114+27778105..27780866Subtilisin N-terminal Region family protein, expressed
LOC_Os04g47160OsAffx.14308.2.S1_at11/114+27782537..27784819Subtilisin N-terminal Region family protein, expressed
LOC_Os04g47160OsAffx.14308.1.S1_x_at1/114+27782537..27784819Subtilisin N-terminal Region family protein, expressed
LOC_Os04g47170OsAffx.26497.1.S1_at11/114+27794627..27796694pollen-specific kinase partner protein, putative, expressed
LOC_Os04g47180Os.5902.1.S2_at11/114+27796943..27802869expressed protein
LOC_Os04g47180Os.5902.1.S1_at11/114+27796943..27802869expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009827biological_processcell wall modification (sensu Magnoliophyta)
GO:0010103biological_processstomatal complex morphogenesis
GO:0042127biological_processregulation of cell proliferation
GO:0009897cellular_componentexternal side of plasma membrane
GO:0048196cellular_componentextracellular matrix (sensu Magnoliophyta)
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004289molecular_functionsubtilase activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53925.1.A1_at--430--7311Chr04:27780330..27780354 (25 bp)
GTGCTGAACTACACGGTCACCGTCA
LOC_Os04g47150
Os.53925.1.A1_at--1000--1351Chr04:27780502..27780526 (25 bp)
AGAGCACTGGTCGAGCGGAGCCTAA
LOC_Os04g47150
Os.53925.1.A1_at--194--6591Chr04:27780554..27780578 (25 bp)
GATTGCCACGCGTGTTAACGTTTGA
LOC_Os04g47150
Os.53925.1.A1_at--773--3631Chr04:27780591..27780615 (25 bp)
CTTCGCTCGGTAGGTTTAGGCTCAT
LOC_Os04g47150
Os.53925.1.A1_at--26--8311Chr04:27780625..27780649 (25 bp)
GGCTAGCGAATTAATCCTTTCCTCC
LOC_Os04g47150
Os.53925.1.A1_at--975--10551Chr04:27780672..27780696 (25 bp)
TTCTTGCTGTTTTTACCACTAGTGC
LOC_Os04g47150
Os.53925.1.A1_at--174--10071Chr04:27780691..27780715 (25 bp)
TAGTGCACGCGGCTGATCTTGACCA
LOC_Os04g47150
Os.53925.1.A1_at--851--5771Chr04:27780739..27780763 (25 bp)
GACGAGATGTGATTTCATCCCCGGC
LOC_Os04g47150
Os.53925.1.A1_at--809--4191Chr04:27780758..27780782 (25 bp)
CCCGGCCCCTTAATCATGATATATG
LOC_Os04g47150
Os.53925.1.A1_at--147--3111Chr04:27780812..27780836 (25 bp)
AATAGATGCAGACGTGACACTCCTC
LOC_Os04g47150
Os.53925.1.A1_at--747--5631Chr04:27780827..27780851 (25 bp)
GACACTCCTCTCAAATAGATGCTGG
LOC_Os04g47150
Target Sequence 
GTGCTGAACTACACGGTCACCGTCAAGACGGCCTCCGGCAAGGCGCCGGCCAGCACGATCGAGGGGCAGCTGAAGTGGGT
GTCGGGGAAAAAGTACGTGGTGCGCAGCCCGATCCTCGTCTGTNCCGGCACCNGCGGCNAAGAGCGCCGCCTNCCATGGG
GGCTGCACCGGCGTAGAGCACTGGTCGAGCGGAGCCTAAGAGATAGCAGCTTGATGATGATTACTAGATTGCCACGCGTG
TTAACGTTTGATGGTGCTTTACTCTTCGCTCGGTAGGTTTAGGCTCATGTATGTGGAGGCTAGCGAATTAATCCTTTCCT
CCGCGGAAGTGGGGTGACGGGTTTTTCTTGCTGTTTTTACCACTAGTGCACGCGGCTGATCTTGACCATTCATTGATTTT
GTACTCCAGGGGACGAGATGTGATTTCATCCCCGGCCCCTTAATCATGATATATGTTCATTTATTCTTTTTTTCCTGTTT
CTCAAATAGATGCAGACGTGACACTCCTCTCAAATAGATGCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53925.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis