Browse Element(s) Details


Os.53965.1.S1_at

Description gb:AK101072.1
DB_XREF= gi:32986281
TID=Os.53965.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53965 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024A10, full insert sequence.
FL= gb:AK101072.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4264011/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42610Os.9501.1.S1_at11/1112+26444032..26453716YABBY protein, expressed
LOC_Os12g42620OsAffx.7870.1.S1_at11/1112+26456780..26457028hypothetical protein
LOC_Os12g42630Os.57031.1.A1_at11/1112+26464577..26465743transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g42640Os.53965.1.S1_at11/1112+26467261..26470961retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g42650Os.51828.2.S1_at11/1112+26472677..26473582expressed protein
LOC_Os12g42650OsAffx.32161.1.S1_x_at11/1112+26472677..26473582expressed protein
LOC_Os12g42650Os.51828.2.S1_x_at5/1112+26472677..26473582expressed protein
LOC_Os12g42660Os.49823.1.S1_at10/1112+26473835..26479946incomplete root hair elongation, putative, expressed
LOC_Os12g42670Os.55154.1.S1_at11/1112+26480253..26481031expressed protein
LOC_Os12g42680NANA12+26484222..26490180retrotransposon protein, putative, unclassified
LOC_Os12g42690OsAffx.7292.1.S1_at1/1112+26490502..26494053retrotransposon protein, putative, unclassified
LOC_Os12g42690OsAffx.7292.1.S1_x_at1/1112+26490502..26494053retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53965.1.S1_at--310--7371Chr12:26469321..26469345 (25 bp)
GTGACAGAGTTATCGACATGCTTAG
LOC_Os12g42640
Os.53965.1.S1_at--235--4891Chr12:26469157..26469181 (25 bp)
GCTTTGCTGTTTACTTTCAAGGAAG
LOC_Os12g42640
Os.53965.1.S1_at--971--5911Chr12:26469133..26469157 (25 bp)
GAGCTATTGAAGTCAGCGCCAGGAA
LOC_Os12g42640
Os.53965.1.S1_at--802--6791Chr12:26469056..26469080 (25 bp)
GTTATTTATAGCTCTCAAACCTTGT
LOC_Os12g42640
Os.53965.1.S1_at--507--52Chr12:26469031..26469055 (25 bp)
ATTGATGGGTTCCTACTGGGCTGCA
LOC_Os12g42640
Os.53965.1.S1_at--258--4772Chr12:26469012..26469036 (25 bp)
GCTGCAGGCCCTATATTGCCATGGA
LOC_Os12g42640
Os.53965.1.S1_at--583--10692Chr12:26468997..26469021 (25 bp)
TTGCCATGGACAGTACACATTTAGT
LOC_Os12g42640
Os.53965.1.S1_at--149--4771Chr12:26468950..26468974 (25 bp)
GCTGCAGCTGTAGCCATTGATGGAA
LOC_Os12g42640
Os.53965.1.S1_at--125--9751Chr12:26468924..26468948 (25 bp)
TAATTGGATGTTCCCGGTTGCTTTC
LOC_Os12g42640
Os.53965.1.S1_at--189--3971Chr12:26468910..26468934 (25 bp)
CGGTTGCTTTCGGTGTCATAGAGAC
LOC_Os12g42640
Os.53965.1.S1_at--112--2371Chr12:26468852..26468876 (25 bp)
AAACCTTCAATCAGCCATTGTGTCA
LOC_Os12g42640
Target Sequence 
GTGACAGAGTTATCGACATGCTTAGAGAGAAACCAAGCTTGGGGCCAAAGGAGTTGCAGGAAAGGCTAGAGCGGAAATAT
CACATTACAGTTGGATATGACAAGGTTTTTAAAGGGAAAGAAAAGGCACTAGAGAAATTGTTTGGCAAATGGGATGATAG
CTATGCTTTGCTGTTTACTTTCAAGGAAGAGCTATTGAAGTCAGCGCCAGGAAGTAAAGTTCAGATTGATATCGAAGAGC
ATAATGGTCAGATGTGCTTCAAAAGGTTATTTATAGCTCTCAAACCTTGTATTGATGGGTTCCTACTGGGCTGCAGGCCC
TATATTGCCATGGACAGTACACATTTAGTTGGAAAAAATAAAGGTCAGCTTGCTGCAGCTGTAGCCATTGATGGAAATAA
TTGGATGTTCCCGGTTGCTTTCGGTGTCATAGAGACAGAATCCATAGAAAGTTGGACTTGGTTTGTTCAAAACCTTCAAT
CAGCCATTGTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis