Browse Element(s) Details


Os.53970.1.S1_at

Description gb:AK101095.1
DB_XREF= gi:32986304
TID=Os.53970.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53970 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024N15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024N15, full insert sequence.
FL= gb:AK101095.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4677010/11expressed protein
LOC_Os03g211001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g296001/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46740Os.24693.1.A1_s_at11/115+26974115..26980331regulator of chromosome condensation, putative, expressed
LOC_Os05g46750Os.56257.1.S1_at11/115+26984094..26986744Protein kinase domain containing protein, expressed
LOC_Os05g46760Os.6085.1.S1_at11/115+26992676..26994094Protein kinase domain containing protein, expressed
LOC_Os05g46770Os.49992.1.S1_at11/115+27001961..27005810expressed protein
LOC_Os05g46770Os.49992.1.S1_s_at11/115+27001961..27005810expressed protein
LOC_Os05g46770Os.53970.1.S1_at10/115+27001961..27005810expressed protein
LOC_Os05g46780Os.12959.1.S1_at11/115+27010298..27015753transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g46780OsAffx.15132.1.S1_at7/115+27010298..27015753transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g46790OsAffx.27346.1.S1_at11/115+27018323..27018883expressed protein
LOC_Os05g46800Os.5308.1.S1_at5/115+27020518..27022416hypothetical protein
LOC_Os05g46810NANA5+27027624..27031523retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53970.1.S1_at--641--2811Chr05:27005242..27005266 (25 bp)
AAGTATTACCTTGTGGACTCCGGCT
LOC_Os05g46770
Os.53970.1.S1_at--1123--8031Chr05:27005322..27005346 (25 bp)
GGAGTATCGAGACAGCCCTGAACCT
LOC_Os05g46770
Os.53970.1.S1_at--680--2533Chr05:27005368..27005392 (25 bp)
AACTATGCACACTCATCTCTTAGGA
LOC_Os05g46770
Os.53970.1.S1_at--317--1031Chr05:27005448..27005472 (25 bp)
AGGTCTCTAGTTATGCTCCTAATAA
LOC_Os05g46770
Os.53970.1.S1_at--262--431Chr05:27005483..27005507 (25 bp)
ATCATAGTTGCATGCTGTGCTCTCC
LOC_Os05g46770
Os.53970.1.S1_at--463--9131Chr05:27005495..27005519 (25 bp)
TGCTGTGCTCTCCATAACTTCATTA
LOC_Os05g46770
Os.53970.1.S1_at--1074--8491Chr05:27005527..27005551 (25 bp)
TGGCATACGGGATAAGCACTTTGAT
LOC_Os05g46770
Os.53970.1.S1_at--732--2511Chr05:27005570..27005594 (25 bp)
AACTATGTGCCCTCACAAGCTACTG
LOC_Os05g46770
Os.53970.1.S1_at--412--4051NONE
CGATCCGATGGATGCATTTCATGAT
NONE
Os.53970.1.S1_at--944--9011Chr05:27005662..27005686 (25 bp)
TGCACTTTGTTTGGTTAACCGTTCT
LOC_Os05g46770
Os.53970.1.S1_at--1066--4911Chr05:27005730..27005754 (25 bp)
GCTTGCGACTGCTGTGTATGTTTGA
LOC_Os05g46770
Target Sequence 
AAGTATTACCTTGTGGACTCCGGCTACCCTAACCGGCCAGGTTACCTTGCACCTTACAAGGGAACCAAATATCATCTACA
GGAGTATCGAGACAGCCCTGAACCTCAAGGTAAGGAAGAAAAATTCAACTATGCACACTCATCTCTTAGGAATGTCATTG
AAAGATCATTTGGAGTTTTGAAAATGAAGTGGCGCATGTTGGAAAAAGGTCTCTAGTTATGCTCCTAATAAACAGGCCAA
AATCATAGTTGCATGCTGTGCTCTCCATAACTTCATTAGGGTTAGTGGCATACGGGATAAGCACTTTGATCGTTGTGACC
GTGATGAGAACTATGTGCCCTCACAAGCTACTGCCGATCAGCCTGAGACAGAAGAAGTGTTTGATGATTGCGATCCGATG
GATGCATTTCATGATTCCATTGCACTTTGTTTGGTTAACCGTTCTTGAAAGTTGTTTGTAAAGCACAAACATGGTTATGT
ACTGTAATGCTTGCGACTGCTGTGTATGTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53970.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis