Browse Element(s) Details


Os.54094.1.S1_at

Description gb:AK101883.1
DB_XREF= gi:32987092
TID=Os.54094.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54094 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070K23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033070K23, full insert sequence.
FL= gb:AK101883.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1895410/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18920NANA2+11050815..11051625hypothetical protein
LOC_Os02g18930OsAffx.24314.1.S1_at11/112+11057582..11059929Calcineurin B-like protein 4, putative
LOC_Os02g18940Os.19378.1.S1_at11/112+11066131..11067378expressed protein
LOC_Os02g18954Os.54094.1.S1_at10/112+11071693..11077519GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g18954Os.32544.1.S1_at1/112+11071693..11077519GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g18954Os.50295.1.S1_at1/112+11071693..11077519GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g18970NANA2+11083113..11086850retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18980NANA2+11089999..11091500retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18990OsAffx.24316.1.S1_at11/112+11093807..11097790GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g19000Os.52113.1.S1_at1/112+11101207..11102628hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54094.1.S1_at--447--2611NONE
AACCCATCGGCTGCCGGGTTTGTGA
NONE
Os.54094.1.S1_at--88--7691Chr02:11077047..11077071 (25 bp)
GGGTTTGTGAACATCGACAGCTCGT
LOC_Os02g18954
Os.54094.1.S1_at--809--2191Chr02:11077123..11077147 (25 bp)
ACAACCGCGCGCAGTACTGGTTTTG
LOC_Os02g18954
Os.54094.1.S1_at--437--7871Chr02:11077155..11077179 (25 bp)
GGTTACACCACGGAGCAAGCTGCCA
LOC_Os02g18954
Os.54094.1.S1_at--718--7531Chr02:11077182..11077206 (25 bp)
GTGGCTGCCGCTGCGTTCTACAATG
LOC_Os02g18954
Os.54094.1.S1_at--368--4831Chr02:11077212..11077236 (25 bp)
GCAAAGTTCACCACGCCGGTTAACT
LOC_Os02g18954
Os.54094.1.S1_at--257--7891Chr02:11077229..11077253 (25 bp)
GGTTAACTTCAAGCAACTGATCCGA
LOC_Os02g18954
Os.54094.1.S1_at--42--9231Chr02:11077270..11077294 (25 bp)
TCCACGCTCGATCTCATGTAGCAAG
LOC_Os02g18954
Os.54094.1.S1_at--401--751Chr02:11077285..11077309 (25 bp)
ATGTAGCAAGGCACGGCGCCCATAA
LOC_Os02g18954
Os.54094.1.S1_at--561--4651Chr02:11077464..11077488 (25 bp)
GCGTGGTCAAGATCCCTAGTCAAAC
LOC_Os02g18954
Os.54094.1.S1_at--113--10371Chr02:11077495..11077519 (25 bp)
TTTTTAACTCATACTTCACACACCG
LOC_Os02g18954
Target Sequence 
AACCCATCGGCTGCCGGGTTTGTGAACATCGACAGCTCGTGCTGCCCCGGGCCTTGCATGCCCTTCCCCTACTTCAACCA
ACCACCCTGCGACAACCGCGCGCAGTACTGGTTTTGGGACGGGGGTTACACCACGGAGCAAGCTGCCATGGTGGCTGCCG
CTGCGTTCTACAATGGCACCGCAAAGTTCACCACGCCGGTTAACTTCAAGCAACTGATCCGAAGGAAAAAGTGATAACTC
CACGCTCGATCTCATGTAGCAAGGCACGGCGCCCATAAAAAAAATCTTACGACATTCGATCAATAATAAGTTAAATGTTC
TCCTTTAGAATGGAAGAATTTTAATAAGAATTGATACAATTACTGACATTTCAATGGATAAGTGGTTTGTTTATATGGAT
TTTGCTATCTTCAAACAACATTATATGTAAAGGCGTGGTCAAGATCCCTAGTCAAACTGTTTTTTTTTAACTCATACTTC
ACACACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54094.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis