Browse Element(s) Details


Os.54112.1.S1_at

Description gb:AK102024.1
DB_XREF= gi:32987233
TID=Os.54112.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.54112 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033080K06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033080K06, full insert sequence.
FL= gb:AK102024.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1492911/11T-complex protein 1, gamma subunit, putative, expressed
LOC_Os11g103001/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14900OsAffx.24262.1.S1_at11/112+8299856..83171881,3-beta-glucan synthase component family protein, expressed
LOC_Os02g14900OsAffx.24262.1.S1_s_at11/112+8299856..83171881,3-beta-glucan synthase component family protein, expressed
LOC_Os02g14900Os.55106.1.S1_at11/112+8299856..83171881,3-beta-glucan synthase component family protein, expressed
LOC_Os02g14910OsAffx.2611.1.S1_at11/112+8323890..8325786bZIP transcription factor family protein, expressed
LOC_Os02g14929Os.54112.1.S1_at11/112+8326129..8343174T-complex protein 1, gamma subunit, putative, expressed
LOC_Os02g14929OsAffx.27518.3.S1_x_at4/112+8326129..8343174T-complex protein 1, gamma subunit, putative, expressed
LOC_Os02g14929OsAffx.22180.1.S1_at1/112+8326129..8343174T-complex protein 1, gamma subunit, putative, expressed
LOC_Os02g14948NANA2+8348912..8349208NA
LOC_Os02g14970OsAffx.12044.1.S1_at11/112+8350305..8352194expressed protein
LOC_Os02g14980OsAffx.2612.1.S1_at11/112+8358863..8362413Sodium/calcium exchanger protein, expressed
LOC_Os02g14980OsAffx.15454.1.S1_x_at1/112+8358863..8362413Sodium/calcium exchanger protein, expressed
LOC_Os02g14990NANA2+8363274..8363903Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g15000NANA2+8367352..8367987Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54112.1.S1_at--337--4511Chr02:8326898..8326922 (25 bp)
GCCGCATTAGCATTTGAGGCAATTC
LOC_Os02g14929
Os.54112.1.S1_at--728--3411Chr02:8326859..8326883 (25 bp)
CAGAATTGTGGCCTGAACGTTATTA
LOC_Os02g14929
Os.54112.1.S1_at--657--5711Chr02:8326498..8326522 (25 bp)
GACTCGTACAGTGTCAAGGCGCAGA
LOC_Os02g14929
Os.54112.1.S1_at--905--8391Chr02:8326481..8326505 (25 bp)
GGCGCAGACATTCAAGACAGCTATT
LOC_Os02g14929
Os.54112.1.S1_at--415--5651Chr02:8326466..8326490 (25 bp)
GACAGCTATTGAGGCTGCCTGCATG
LOC_Os02g14929
Os.54112.1.S1_at--136--9191Chr02:8326451..8326475 (25 bp)
TGCCTGCATGCTCCTGAGGATCGAT
LOC_Os02g14929
Os.54112.1.S1_at--724--6751Chr02:8326383..8326407 (25 bp)
GTTCAGCTCCAAAGCAACCTCAAAT
LOC_Os02g14929
Os.54112.1.S1_at--1100--6371Chr02:8326325..8326349 (25 bp)
GATCCCAGAGTAGAATGTCACATGA
LOC_Os02g14929
Os.54112.1.S1_at--329--7511Chr02:8326240..8326264 (25 bp)
GTGGTAGCCTTTATAATCATTTCCC
LOC_Os02g14929
Os.54112.1.S1_at--32--8351Chr02:8326185..8326209 (25 bp)
GGCTGTTAGCCATCCATGTTTATGT
LOC_Os02g14929
Os.54112.1.S1_at--444--7012Chr11:5586488..5586517 (24 bp)
GTACTCAATGAGTTTGCTTCTAATT
LOC_Os11g10300
Target Sequence 
GCCGCATTAGCATTTGAGGCAATTCCAAGAACTCTTTTACAGAATTGTGGCCTGAACGTTATTAGGACAATGACACAACT
TCAGGGAAAGCATGCAAATGGTGAAAATGCTTGGGTTGGCATTGATGGAAGCAGTNGTGATATTGTGGATATGAAAGAGC
GGAAGATCTGGGACTCGTACAGTGTCAAGGCGCAGACATTCAAGACAGCTATTGAGGCTGCCTGCATGCTCCTGAGGATC
GATGATATTGTCAGTGGCATCAAGAAGAAGCAAGCTCCTGGAGCCAGTTCAGCTCCAAAGCAACCTCAAATAGAACAAGA
GGGTGATGCAGACAATGAACAGATGATCCCAGAGTAGAATGTCACATGAATGNATCAANCACACTTAACCTAACATATAA
ATCAGTCTGTTGAAATTCTTTAAATTTTTGTGGTAGCCTTTATAATCATTTCCCAACACAACTTTTGTATCTGTCAGTTT
GTATGGCTGTTAGCCATCCATGTTTATGTTGGTCACATAGTTGAGTACTCAATGAGTTTGCTTCTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54112.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis