Browse Element(s) Details


Os.54117.1.S1_at

Description gb:AK102042.1
DB_XREF= gi:32987251
TID=Os.54117.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54117 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033081J05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033081J05, full insert sequence.
FL= gb:AK102042.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2886011/113'-5' exonuclease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28820NANA5+16808834..16815061retrotransposon protein, putative, unclassified
LOC_Os05g28830Os.20378.1.S1_at11/115+16816424..16818149expressed protein
LOC_Os05g28840Os.18438.1.S1_at11/115+16827979..16829065expressed protein
LOC_Os05g28840Os.54627.1.S1_at1/115+16827979..16829065expressed protein
LOC_Os05g28850NANA5+16834133..16834536hypothetical protein
LOC_Os05g28860Os.54117.1.S1_at11/115+16837937..168440343'-5' exonuclease family protein, expressed
LOC_Os05g28870Os.6174.1.S1_at11/115+16847174..16851170Mitochondrial carrier protein, expressed
LOC_Os05g28880OsAffx.4462.1.S1_at11/115+16852728..16852976hypothetical protein
LOC_Os05g28890Os.47130.4.A1_x_at1/115+16855668..16855994retrotransposon protein, putative, unclassified
LOC_Os05g28890Os.37083.2.S1_at1/115+16855668..16855994retrotransposon protein, putative, unclassified
LOC_Os05g28900NANA5+16856638..16862225retrotransposon protein, putative, unclassified
LOC_Os05g28910Os.28943.1.S1_x_at2/115+16862824..16865974retrotransposon protein, putative, unclassified
LOC_Os05g28920OsAffx.24330.2.S1_at1/115+16867880..16871004retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
GO:0005515molecular_functionprotein binding
GO:0008408molecular_function3'-5' exonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54117.1.S1_at--137--2031Chr05:16842856..16842880 (25 bp)
ACTACTGGTGGTCTATCTGGGCTGT
LOC_Os05g28860
Os.54117.1.S1_at--676--1191Chr05:16843544..16843568 (25 bp)
AGTATGCTGCCCTTGATGCTGTGGT
LOC_Os05g28860
Os.54117.1.S1_at--424--6351Chr05:16843558..16843582 (25 bp)
GATGCTGTGGTCCTTGTTCATATAT
LOC_Os05g28860
Os.54117.1.S1_at--515--8791Chr05:16843572..16843596 (25 bp)
TGTTCATATATTCCATCACGTCAAG
LOC_Os05g28860
Os.54117.1.S1_at--741--2151Chr05:16843599..16843623 (25 bp)
ACAGCCTCAGTTTGGTGTCACCGAG
LOC_Os05g28860
Os.54117.1.S1_at--345--851Chr05:16843638..16843752 (25 bp)
ATGGAAGTCCCATATTGTTTCTCGG
LOC_Os05g28860
Os.54117.1.S1_at--936--111Chr05:16843760..16843784 (25 bp)
ATTCACGGAGTACATTACGCTTCTA
LOC_Os05g28860
Os.54117.1.S1_at--553--5731Chr05:16843807..16843831 (25 bp)
GACTGTGGACGTAGTATCTTGCTAA
LOC_Os05g28860
Os.54117.1.S1_at--124--4751Chr05:16843901..16843925 (25 bp)
GCTGTTGCTGCCATCTGTAAATATT
LOC_Os05g28860
Os.54117.1.S1_at--568--4831Chr05:16843930..16843954 (25 bp)
GCTCAGATTTCTTCCATGTTGTGTT
LOC_Os05g28860
Os.54117.1.S1_at--104--1231Chr05:16843985..16844009 (25 bp)
AGTTCAGGCATGCATCTTTTTGGTG
LOC_Os05g28860
Target Sequence 
ACTACTGGTGGTCTATCTGGGCTGTCCAAGAAAATATTAGGAGCTGGTTTGAACAAGACGCGACGGAATAGCAACTGGGA
ACAGCGCCCTCTCACCCAGAATCAGAAAGAGTATGCTGCCCTTGATGCTGTGGTCCTTGTTCATATATTCCATCACGTCA
AGGGACAGCCTCAGTTTGGTGTCACCGAGGGATGCAAAGTGGAATGGAAGTCCCATATTGTTTCTCGGGTGAAGAATTCA
CGGAGTACATTACGCTTCTAAAATTAAGGGCTGATCAAAGTTGACTGTGGACGTAGTATCTTGCTAAAGTGTTAGCCAGG
AAGAAGTTAAGAATCAATCTGTTCATATCTTTCTCACATCTTACATGATCTCAGCAGCTGTTGCTGCCATCTGTAAATAT
TATATGCTCAGATTTCTTCCATGTTGTGTTATCGCTAATTAGGAGCTATGAGCCTATGACAGTTCAGGCATGCATCTTTT
TGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54117.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis