Browse Element(s) Details


Os.54121.1.S2_s_at

Description gb:CB674621
DB_XREF= gi:29678346
DB_XREF=OSJNEe09M01.r
CLONE=OSJNEe09M01
TID=Os.54121.1
CNT=3
FEA=FLmRNA
TIER=ConsEnd
STK=1
UG=Os.54121 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033082B12, full insert sequence
FL= gb:AK102051.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0207011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02030OsAffx.25832.1.S1_at11/114+630343..633741NB-ARC domain containing protein
LOC_Os04g02040OsAffx.25833.1.S1_at11/114+634634..634948truncated rp1-4 protein, putative
LOC_Os04g02050Os.18856.1.S1_at9/114+636698..640221Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthethase 2, putative, expressed
LOC_Os04g02060OsAffx.25834.1.S1_at11/114+648010..648949hypothetical protein
LOC_Os04g02070Os.54121.1.S1_s_at11/114+651744..658081expressed protein
LOC_Os04g02070Os.54121.1.S2_s_at11/114+651744..658081expressed protein
LOC_Os04g02080Os.45212.1.S1_x_at7/114+661177..663165retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02090OsAffx.25156.4.S1_x_at11/114+664174..667203hypothetical protein
LOC_Os04g02090OsAffx.25156.1.S1_x_at4/114+664174..667203hypothetical protein
LOC_Os04g02090OsAffx.25156.5.S1_x_at3/114+664174..667203hypothetical protein
LOC_Os04g02100OsAffx.25836.1.S1_at11/114+670089..671527hypothetical protein
LOC_Os04g02110Os.6093.2.S2_at11/114+671654..678229NB-ARC domain containing protein, expressed
LOC_Os04g02110Os.6093.3.S1_at11/114+671654..678229NB-ARC domain containing protein, expressed
LOC_Os04g02110Os.6093.2.S1_at11/114+671654..678229NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54121.1.S2_s_at--864--8131Chr04:652257..652281 (25 bp)
GGACAGGACAGCACCTAGATTCTAT
LOC_Os04g02070
Os.54121.1.S2_s_at--689--4431Chr04:652109..652133 (25 bp)
GCCATCGCTGATGCCATTCAACTAT
LOC_Os04g02070
Os.54121.1.S2_s_at--544--8231Chr04:652084..652108 (25 bp)
GGCAAGTTCGCCTACCATGGTGATC
LOC_Os04g02070
Os.54121.1.S2_s_at--428--811Chr04:652068..652092 (25 bp)
ATGGTGATCTGGTGTGCCACTCAAA
LOC_Os04g02070
Os.54121.1.S2_s_at--87--6871Chr04:652028..652052 (25 bp)
GTTTGTTATATACTATGTCCTGCCA
LOC_Os04g02070
Os.54121.1.S2_s_at--817--771Chr04:652014..652038 (25 bp)
ATGTCCTGCCATTTTAATTTTCAAG
LOC_Os04g02070
Os.54121.1.S2_s_at--492--7371Chr04:651922..651946 (25 bp)
GTGACCTCTGTTATCCTTGTTGACA
LOC_Os04g02070
Os.54121.1.S2_s_at--961--1471Chr04:651839..651863 (25 bp)
AGAATCAGTCAGTTCCATGGCCTGG
LOC_Os04g02070
Os.54121.1.S2_s_at--794--9231Chr04:651826..651850 (25 bp)
TCCATGGCCTGGTGTGACAGTTTTA
LOC_Os04g02070
Os.54121.1.S2_s_at--330--1991Chr04:651794..651818 (25 bp)
ACTGCGTTGCCTGCAAAATGTTGCT
LOC_Os04g02070
Os.54121.1.S2_s_at--731--9111Chr04:651773..651797 (25 bp)
TGCTGTTTTGTGTTCCTCGTATGAT
LOC_Os04g02070
Target Sequence 
GGACAGGACAGCACCTAGATTCTATGGGTGATAAGTGCTCCAGAGATGGGAGATGAGTGGCAGAACAGAAGCAAAGGTCC
AAGGTGTGAGAAAGTCAACTGGGGCAATGAAGACAGCAAAAATTACGGTTGGTTGGCAAAGACCGCATGCCATCGCTGAT
GCCATTCAACTATGGCAAGTTCGCCTACCATGGTGATCTGGTGTGCCACTCAAACTTCAGAAGAGAGCAGTTTGTTATAT
ACTATGTCCTGCCATTTTAATTTTCAAGTTAGGGAAAAGGTGACCTTTCTTTCTTTTCTTTTCTTTTCTTTTCCTTTTTA
CAAGGAAGGGATAAGGTGACCTCTGTTATCCTTGTTGACAGGTTTTCTAGTTTTGAGATACTAGTGCTAAAGATGCATAT
ATAATTTGAAATTGTTTCAGAATCAGTCAGTTCCATGGCCTGGTGTGACAGTTTTATTTTCACACTGCGTTGCCTGCAAA
ATGTTGCTGTTTTGTGTTCCTCGTATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54121.1.S2_s_at     

Putative homologies in rice

Putative homologies in arabidopsis