Browse Element(s) Details


Os.54140.1.S1_at

Description gb:AK102160.1
DB_XREF= gi:32987369
TID=Os.54140.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54140 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033086G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033086G06, full insert sequence.
FL= gb:AK102160.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4158011/11Ubiquitin carboxyl-terminal hydrolase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41530Os.49943.1.S1_at10/118+26100851..26105664Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g41540Os.49943.1.S1_at1/118+26107480..26111135Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41550Os.50537.1.S1_at11/118+26112535..26118103expressed protein
LOC_Os08g41560Os.49929.1.S1_at11/118+26120644..26123971expressed protein
LOC_Os08g41570OsAffx.29622.1.S1_at11/118+26127008..26130062hypothetical protein
LOC_Os08g41580Os.54140.1.S1_at11/118+26130550..26135298Ubiquitin carboxyl-terminal hydrolase 1, putative, expressed
LOC_Os08g41580OsAffx.29623.2.S1_s_at1/118+26130550..26135298Ubiquitin carboxyl-terminal hydrolase 1, putative, expressed
LOC_Os08g41590OsAffx.17460.1.S1_at11/118+26136620..26137898POT family protein, expressed
LOC_Os08g41600OsAffx.6106.1.S1_x_at11/118+26139834..26140312proton-dependent oligopeptide transport, putative
LOC_Os08g41610Os.25022.1.A1_at11/118+26142472..26146492Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g41620OsAffx.29623.2.S1_s_at11/118+26149187..26153100Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41620Os.25022.1.A1_at1/118+26149187..26153100Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41630OsAffx.29624.1.S1_s_at11/118+26154545..26158623Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g41630OsAffx.29623.2.S1_s_at1/118+26154545..26158623Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0000502cellular_componentproteasome complex (sensu Eukaryota)
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54140.1.S1_at--900--1231Chr08:26131016..26131040 (25 bp)
AGTTGAATCTTGTTGCGTTGGCTTA
LOC_Os08g41580
Os.54140.1.S1_at--910--6611Chr08:26131000..26131024 (25 bp)
GTTGGCTTAGTCATTGCAGGACTCC
LOC_Os08g41580
Os.54140.1.S1_at--609--10751Chr08:26130972..26130996 (25 bp)
TTGACCGCAACATGTACATACCAGT
LOC_Os08g41580
Os.54140.1.S1_at--283--5211Chr08:26130942..26130966 (25 bp)
GAATTCGGTTGTTCTTGACCAGCTG
LOC_Os08g41580
Os.54140.1.S1_at--801--10751Chr08:26130928..26130952 (25 bp)
TTGACCAGCTGATATCCCTTTTTTG
LOC_Os08g41580
Os.54140.1.S1_at--327--6512Chr04:16791250..16791277 (23 bp)
GATATCCCTTTTTTGTCCATGAGTG
NONE
Os.54140.1.S1_at--898--5111Chr08:26130816..26130840 (25 bp)
GCACATGGACAGGTTTTCTTCTTCT
LOC_Os08g41580
Os.54140.1.S1_at--286--5391Chr08:26130727..26130751 (25 bp)
GAAGCACCGGTACAGTTTTGTCGAT
LOC_Os08g41580
Os.54140.1.S1_at--642--10251Chr08:26130711..26130735 (25 bp)
TTTGTCGATTGTTACTGTTACCTGT
LOC_Os08g41580
Os.54140.1.S1_at--573--3591Chr08:26130653..26130677 (25 bp)
CATTCGCCATGTTGAGTTTTGCCTC
LOC_Os08g41580
Os.54140.1.S1_at--345--6051Chr08:26130586..26130610 (25 bp)
GAGATACACCTTGAGAATTTTGCAT
LOC_Os08g41580
Target Sequence 
AGTTGAATCTTGTTGCGTTGGCTTAGTCATTGCAGGACTCCAATTTGACCGCAACATGTACATACCAGTTGAGAGAATTC
GGTTGTTCTTGACCAGCTGATATCCCTTTTTTGTCCATGAGTGTATTAATAATTTATTTGAAAACAAACGGCATAGTTGG
ACATTTTGCATTAGAGAATTTGAGCAAAATCATTATGTAGGCACATGGACAGGTTTTCTTCTTCTTTTTGAAGTAAGCAA
AATCATTATGTAGGCACATGCACAGGTTTTTTTTCTTCTTTTTGAAGTAGAAGCACCGGTACAGTTTTGTCGATTGTTAC
TGTTACCTGTAATTAGTTTACACTAAAGTACTGTGGAAAATATCATTCGCCATGTTGAGTTTTGCCTCAATATTTTTTTA
TGGCAAAGAGACATTGTATGCAAGATGATTGAGATACACCTTGAGAATTTTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54140.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis