Browse Element(s) Details


Os.54177.1.S1_s_at

Description gb:AK102368.1
DB_XREF= gi:32987577
TID=Os.54177.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54177 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033091K12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033091K12, full insert sequence.
FL= gb:AK102368.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3465011/11Leucine Rich Repeat family protein, expressed
LOC_Os04g379041/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34600Os.46306.1.S1_x_at6/118+21607586..21610911transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g34610OsAffx.29509.1.S1_at8/118+21615253..21617175hypothetical protein
LOC_Os08g34620OsAffx.6022.1.S1_at11/118+21622638..21623560hypothetical protein
LOC_Os08g34640Os.50267.1.S1_at11/118+21623684..21629276Leucine Rich Repeat family protein, expressed
LOC_Os08g34630OsAffx.29510.1.S1_at11/118+21629199..21630666hypothetical protein
LOC_Os08g34650Os.54177.1.S1_s_at11/118+21632495..21637793Leucine Rich Repeat family protein, expressed
LOC_Os08g34650OsAffx.29511.1.S1_at11/118+21632495..21637793Leucine Rich Repeat family protein, expressed
LOC_Os08g34650Os.18569.1.S1_at11/118+21632495..21637793Leucine Rich Repeat family protein, expressed
LOC_Os08g34660OsAffx.17332.1.S1_at11/118+21639890..21640731hypothetical protein
LOC_Os08g34670NANA8+21645020..21647880retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g34680OsAffx.28184.1.S1_x_at3/118+21651323..21651607hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0015071molecular_functionprotein phosphatase type 2C activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54177.1.S1_s_at--1067--10431Chr08:21636651..21636675 (25 bp)
TTGTACTTTCCCAGAACTCCTTGTC
LOC_Os08g34650
Os.54177.1.S1_s_at--1089--8231Chr08:21636625..21636649 (25 bp)
GGCACAATCCCTCCTGAGATTGGTA
LOC_Os08g34650
Os.54177.1.S1_s_at--1017--6311Chr08:21636571..21636595 (25 bp)
GATGCAAACCAGCTCGAGGGCACTA
LOC_Os08g34650
Os.54177.1.S1_s_at--551--8172Chr08:21636522..21636546 (25 bp)
GGAACTTGCAGAAGCTCTATCTTTT
LOC_Os08g34650
Os.54177.1.S1_s_at--1086--2351Chr08:21636450..21636474 (25 bp)
AAAGCCTACTATCTGTCGACATCTA
LOC_Os08g34650
Os.54177.1.S1_s_at--586--8651Chr08:21636410..21636434 (25 bp)
TGGGCAGCTGCCTATAGTGTTGGCT
LOC_Os08g34650
Os.54177.1.S1_s_at--276--5391Chr08:21636380..21636404 (25 bp)
GAAGCAGCTCCAGCAAATTACGCTA
LOC_Os08g34650
Os.54177.1.S1_s_at--624--5011Chr08:21636306..21636330 (25 bp)
GCAGTTTGTCCGTAATTGATTTCAT
LOC_Os08g34650
Os.54177.1.S1_s_at--924--10031Chr08:21636275..21636299 (25 bp)
TAGTTTTGTTGGCACAATCCCTCCA
LOC_Os08g34650
Os.54177.1.S1_s_at--543--3071Chr08:21636205..21636229 (25 bp)
AATCTTCTCAATGGTAGCATCCCCT
LOC_Os08g34650
Os.54177.1.S1_s_at--602--4751Chr08:21636172..21636196 (25 bp)
GCTGACTGCCCAACTTTGAGACGAG
LOC_Os08g34650
Target Sequence 
TTGTACTTTCCCAGAACTCCTTGTCTGGCACAATCCCTCCTGAGATTGGTAACTGCCAATTGCTGATATGGCTGCATCTA
GATGCAAACCAGCTCGAGGGCACTATACCAAAAGAACTAGCAAACCTGAGGAACTTGCAGAAGCTCTATCTTTTTGAGAA
TTGCCTCACTGGGGAGTTTCCTGAAGATATATGGGGAATCCAAAGCCTACTATCTGTCGACATCTATAAAAACAATTTCA
CTGGGCAGCTGCCTATAGTGTTGGCTGAGATGAAGCAGCTCCAGCAAATTACGCTATTCAATAATTCATTCACTGGTGTC
ATACCACAGGGGTTGGGTGTAAATAGCAGTTTGTCCGTAATTGATTTCATAAACAATAGTTTTGTTGGCACAATCCCTCC
AAAAATTTGTTCAGGGGGAAGATTGGAAGTTTTGAACTTGGGTTCAAATCTTCTCAATGGTAGCATCCCCTCTGGTATCG
CTGACTGCCCAACTTTGAGACGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54177.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis