Browse Element(s) Details


Os.54185.1.S1_at

Description gb:AK102412.1
DB_XREF= gi:32987621
TID=Os.54185.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54185 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033093A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033093A04, full insert sequence.
FL= gb:AK102412.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7204911/11Single-strand binding protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72049Os.54185.1.S1_at11/111+42108502..42128836Single-strand binding protein family protein, expressed
LOC_Os01g72049Os.52862.1.S1_at10/111+42108502..42128836Single-strand binding protein family protein, expressed
LOC_Os01g72070NANA1+42135362..42136420retrotransposon protein, putative, unclassified
LOC_Os01g72080Os.12000.1.S1_at11/111+42145130..42146259EF hand family protein, expressed
LOC_Os01g72090OsAffx.2460.1.S1_x_at11/111+42149118..42151936Ferredoxin-dependent bilin reductase family protein, expressed
LOC_Os01g72090Os.15397.1.S1_at11/111+42149118..42151936Ferredoxin-dependent bilin reductase family protein, expressed
LOC_Os01g72100Os.20355.1.S1_at11/111+42152913..42154005Polcalcin, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54185.1.S1_at--348--1271Chr01:42110625..42110649 (25 bp)
AGATCTGATCAGTGGTAAGCCCTTC
LOC_Os01g72049
Os.54185.1.S1_at--721--9791Chr01:42110610..42110634 (25 bp)
TAAGCCCTTCCCTGTGCAATATGTA
LOC_Os01g72049
Os.54185.1.S1_at--1085--8731Chr01:42110589..42110613 (25 bp)
TGTACCTCAGGTTTGTTCTATTTAG
LOC_Os01g72049
Os.54185.1.S1_at--574--291Chr01:42110554..42110578 (25 bp)
ATAGTTGTCTTAAGGAGCTGGTTCT
LOC_Os01g72049
Os.54185.1.S1_at--549--5891Chr01:42110540..42110564 (25 bp)
GAGCTGGTTCTTTTTCTTTAAGGCA
LOC_Os01g72049
Os.54185.1.S1_at--384--10331Chr01:42110524..42110548 (25 bp)
TTTAAGGCAAGTCGCAGTGCCTGCT
LOC_Os01g72049
Os.54185.1.S1_at--334--5031Chr01:42110511..42110535 (25 bp)
GCAGTGCCTGCTAATACCTAATTCA
LOC_Os01g72049
Os.54185.1.S1_at--409--4931Chr01:42110457..42110481 (25 bp)
GCTTGACTACCACATGCGTTAATGG
LOC_Os01g72049
Os.54185.1.S1_at--484--2911Chr01:42110437..42110461 (25 bp)
AATGGAAGCCATGTGGGCCCGGTTT
LOC_Os01g72049
Os.54185.1.S1_at--321--11Chr01:42110424..42110448 (25 bp)
TGGGCCCGGTTTCATTAAGGTTATG
LOC_Os01g72049
Os.54185.1.S1_at--330--4391Chr01:42110367..42110391 (25 bp)
GCCAATACATATCGTCATATCCCTG
LOC_Os01g72049
Target Sequence 
AGATCTGATCAGTGGTAAGCCCTTCCCTGTGCAATATGTACCTCAGGTTTGTTCTATTTAGTACAAATATTATAGTTGTC
TTAAGGAGCTGGTTCTTTTTCTTTAAGGCAAGTCGCAGTGCCTGCTAATACCTAATTCAGGTAGGTATTAGCGAATGAAA
TTATTTTGGCTTGACTACCACATGCGTTAATGGAAGCCATGTGGGCCCGGTTTCATTAAGGTTATGTTAGGATGTATATA
CTAGTCATTCCAATTAATGCCAATACATATCGTCATATCCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54185.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis