Browse Element(s) Details


Os.54237.1.S1_at

Description gb:AK102683.1
DB_XREF= gi:32987892
TID=Os.54237.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54237 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033102K22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033102K22, full insert sequence.
FL= gb:AK102683.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0413011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04090Os.46735.1.S1_at11/1110+1874201..1878141NB-ARC domain containing protein, expressed
LOC_Os10g04090OsAffx.8602.1.S1_s_at11/1110+1874201..1878141NB-ARC domain containing protein, expressed
LOC_Os10g04090OsAffx.8602.1.S1_x_at6/1110+1874201..1878141NB-ARC domain containing protein, expressed
LOC_Os10g04100NANA10+1880224..1880581hypothetical protein
LOC_Os10g04110Os.47753.1.S1_at11/1110+1881932..1886668NB-ARC domain containing protein, expressed
LOC_Os10g04120OsAffx.20767.1.S1_at11/1110+1888519..1893464NB-ARC domain containing protein
LOC_Os10g04120Os.33624.1.S1_at1/1110+1888519..1893464NB-ARC domain containing protein
LOC_Os10g04130Os.54237.1.S1_at11/1110+1897478..1899973expressed protein
LOC_Os10g04140Os.26886.2.S1_s_at11/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140Os.26886.4.S1_at10/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140Os.26886.6.S1_s_at9/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140OsAffx.16467.1.S1_at7/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140Os.51634.1.S1_at2/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140OsAffx.3425.1.S1_at1/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04150Os.26886.3.S1_x_at11/1110+1914019..1915194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04160OsAffx.18120.1.S1_at11/1110+1916845..1918030expressed protein
LOC_Os10g04170Os.48140.1.A1_at10/1110+1922659..1929564hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54237.1.S1_at--922--4331Chr10:1899327..1899510 (25 bp)
CCATGCTGCAACAAGCACTACAAGA
LOC_Os10g04130
Os.54237.1.S1_at--1041--7731Chr10:1899605..1899629 (25 bp)
GGTGGTGCCGATATGAAGCCCCAAC
LOC_Os10g04130
Os.54237.1.S1_at--607--2611Chr10:1899620..1899644 (25 bp)
AAGCCCCAACCGTGACAGAAGACTG
LOC_Os10g04130
Os.54237.1.S1_at--34--2771Chr10:1899638..1899662 (25 bp)
AAGACTGCCGGCCAACTGTTGATGA
LOC_Os10g04130
Os.54237.1.S1_at--642--1191Chr10:1899668..1899692 (25 bp)
AGTAGATGGCTTTTGATGTTTGTAA
LOC_Os10g04130
Os.54237.1.S1_at--1099--651Chr10:1899692..1899716 (25 bp)
ATGCAAATGTGCACCTCTTTGTGTT
LOC_Os10g04130
Os.54237.1.S1_at--431--3691Chr10:1899708..1899732 (25 bp)
CTTTGTGTTTCTGCCAAGTTTCTTG
LOC_Os10g04130
Os.54237.1.S1_at--107--3891Chr10:1899734..1899758 (25 bp)
CTGTGTTTCAGAGATGGCCATTTGC
LOC_Os10g04130
Os.54237.1.S1_at--237--871Chr10:1899747..1899771 (25 bp)
ATGGCCATTTGCATCACAAGTCCTC
LOC_Os10g04130
Os.54237.1.S1_at--689--371Chr10:1899759..1899783 (25 bp)
ATCACAAGTCCTCCCCTGCAGATGG
LOC_Os10g04130
Os.54237.1.S1_at--485--8951Chr10:1899802..1899826 (25 bp)
TGACTTTTATTCATGTCGCAGTTGA
LOC_Os10g04130
Target Sequence 
CCATGCTGCAACAAGCACTACAAGAAACTGCTCTCCCCAGCAGACATGAAGACAATCACGACACTGGTGGAGAATGGAGG
CTGCAAAGGCATTCGGCTGCGTGCCAAGAAGGCGGCATCGGTGGTGCCGATATGAAGCCCCAACCGTGACAGAAGACTGC
CGGCCAACTGTTGATGATGTTAAGTAGATGGCTTTTGATGTTTGTAATGCAAATGTGCACCTCTTTGTGTTTCTGCCAAG
TTTCTTGGCTGTGTTTCAGAGATGGCCATTTGCATCACAAGTCCTCCCCTGCAGATGGAGTCTCCCCCAGTAGTAATGAC
TTTTATTCATGTCGCAGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54237.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis