Browse Element(s) Details


Os.54241.1.S1_at

Description gb:AK102738.1
DB_XREF= gi:32987947
TID=Os.54241.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54241 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033106D23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033106D23, full insert sequence.
FL= gb:AK102738.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1916011/11Endomembrane protein 70 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19130OsAffx.17068.1.S1_at11/118+11435333..11435794hypothetical protein
LOC_Os08g19140Os.53001.1.S1_at11/118+11436299..11447193adenylate kinase family protein, putative, expressed
LOC_Os08g19150OsAffx.5874.1.S1_at11/118+11452315..11452824hypothetical protein
LOC_Os08g19160Os.54101.1.S1_x_at11/118+11454015..11456370Endomembrane protein 70 containing protein, expressed
LOC_Os08g19160Os.54241.1.S1_at11/118+11454015..11456370Endomembrane protein 70 containing protein, expressed
LOC_Os08g19170Os.7479.1.A1_at11/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170OsAffx.29271.1.S1_at11/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170Os.25401.1.S1_s_at10/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170Os.25401.2.S1_at9/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19180OsAffx.31278.1.S1_at7/118+11463796..11466538Transposable element protein, putative, MuDR
LOC_Os08g19180OsAffx.31379.1.S1_at1/118+11463796..11466538Transposable element protein, putative, MuDR
LOC_Os08g19190OsAffx.29272.3.S1_x_at11/118+11467146..11468858hypothetical protein
LOC_Os08g19190OsAffx.29272.2.S1_x_at7/118+11467146..11468858hypothetical protein
LOC_Os08g19200OsAffx.5875.1.S1_at11/118+11470766..11471227hypothetical protein
LOC_Os08g19210Os.49742.2.S1_at11/118+11480945..11485029expressed protein
LOC_Os08g19210Os.49742.1.S1_at11/118+11480945..11485029expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54241.1.S1_at--806--10511Chr08:11456287..11456311 (25 bp)
TTCACTTTGTATTTATATCTGCACG
LOC_Os08g19160
Os.54241.1.S1_at--148--6891Chr08:11456295..11456319 (25 bp)
GTATTTATATCTGCACGTGTCAGCT
LOC_Os08g19160
Os.54241.1.S1_at--663--251Chr08:11456301..11456325 (25 bp)
ATATCTGCACGTGTCAGCTGTTTGA
LOC_Os08g19160
Os.54241.1.S1_at--854--5071Chr08:11456307..11456331 (25 bp)
GCACGTGTCAGCTGTTTGACTTCCA
LOC_Os08g19160
Os.54241.1.S1_at--630--7451Chr08:11456311..11456335 (25 bp)
GTGTCAGCTGTTTGACTTCCACTGC
LOC_Os08g19160
Os.54241.1.S1_at--469--1611Chr08:11456316..11456340 (25 bp)
AGCTGTTTGACTTCCACTGCCTTTG
LOC_Os08g19160
Os.54241.1.S1_at--841--10251Chr08:11456321..11456345 (25 bp)
TTTGACTTCCACTGCCTTTGCTTAA
LOC_Os08g19160
Os.54241.1.S1_at--449--10691Chr08:11456327..11456351 (25 bp)
TTCCACTGCCTTTGCTTAAGATCTA
LOC_Os08g19160
Os.54241.1.S1_at--738--4451Chr08:11456334..11456358 (25 bp)
GCCTTTGCTTAAGATCTATCCATGT
LOC_Os08g19160
Os.54241.1.S1_at--994--4891Chr08:11456340..11456364 (25 bp)
GCTTAAGATCTATCCATGTGTCAAG
LOC_Os08g19160
Os.54241.1.S1_at--110--6431Chr08:11456346..11456370 (25 bp)
GATCTATCCATGTGTCAAGTGTGAC
LOC_Os08g19160
Target Sequence 
TTCACTTTGTATTTATATCTGCACGTGTCAGCTGTTTGACTTCCACTGCCTTTGCTTAAGATCTATCCATGTGTCAAGTG
TGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54241.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis