Browse Element(s) Details


Os.54269.1.S1_s_at

Description gb:AK102948.1
DB_XREF= gi:32988157
TID=Os.54269.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54269 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033115B22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033115B22, full insert sequence.
FL= gb:AK102948.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4806011/11Phosphatidyl serine synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48020Os.12395.1.S1_at11/115+27446984..27450497Syntaxin 72, putative, expressed
LOC_Os05g48030Os.54375.1.S1_at11/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48030OsAffx.15141.3.S1_s_at11/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48030Os.50851.1.S1_at11/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48030Os.8747.1.S2_x_at1/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48040Os.32283.1.S1_at11/115+27458858..27462800MATE efflux family protein, expressed
LOC_Os05g48040Os.11344.1.S1_s_at11/115+27458858..27462800MATE efflux family protein, expressed
LOC_Os05g48050Os.53508.1.S1_at11/115+27463712..27465515Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os05g48060Os.54269.1.S1_s_at11/115+27469321..27474965Phosphatidyl serine synthase family protein, expressed
LOC_Os05g48070Os.9498.1.S1_at11/115+27475473..27479753expressed protein
LOC_Os05g48090NANA5+27483657..27486961transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48100NANA5+27488546..27491031transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48110Os.47463.1.S1_x_at5/115+27491286..27493497transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48110Os.14491.2.S1_x_at4/115+27491286..27493497transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006659biological_processphosphatidylserine biosynthesis
GO:0003882molecular_functionCDP-diacylglycerol-serine O-phosphatidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54269.1.S1_s_at--1147--10791Chr05:27474129..27474153 (25 bp)
TTGTAGAGCTTCTTATATGTATGAA
LOC_Os05g48060
Os.54269.1.S1_s_at--1096--8331Chr05:27474582..27474606 (25 bp)
GGCTGTTTCATGATCCCATGCCTAC
LOC_Os05g48060
Os.54269.1.S1_s_at--121--551Chr05:27474594..27474618 (25 bp)
ATCCCATGCCTACTTGGTTGATCAT
LOC_Os05g48060
Os.54269.1.S1_s_at--613--3611Chr05:27474606..27474630 (25 bp)
CTTGGTTGATCATCTTTTGGAGTTC
LOC_Os05g48060
Os.54269.1.S1_s_at--195--3331Chr05:27474642..27474666 (25 bp)
CACTAGTGGTTTTCTTGCTTGCATG
LOC_Os05g48060
Os.54269.1.S1_s_at--101--3631Chr05:27474655..27474679 (25 bp)
CTTGCTTGCATGGTCTTGGAGGAAT
LOC_Os05g48060
Os.54269.1.S1_s_at--944--3851Chr05:27474683..27474707 (25 bp)
CTGAAATATCAGAGAAAGCGGCTAT
LOC_Os05g48060
Os.54269.1.S1_s_at--381--1591Chr05:27474699..27474723 (25 bp)
AGCGGCTATAATGGATTAATTTTTC
LOC_Os05g48060
Os.54269.1.S1_s_at--474--9411Chr05:27474722..27474746 (25 bp)
TCGGAAGATTTTCGACTCTGGACCC
LOC_Os05g48060
Os.54269.1.S1_s_at--1070--771Chr05:27474785..27474809 (25 bp)
ATGTGATGGGTGATGATGTAACTTA
LOC_Os05g48060
Os.54269.1.S1_s_at--451--3231Chr05:27474905..27474929 (25 bp)
CAAGAGGGATGGCTAATTTCAGATT
LOC_Os05g48060
Target Sequence 
TTGTAGAGCTTCTTATATGTATGAAGTTTGGACATGGGCTGTTTCATGATCCCATGCCTACTTGGTTGATCATCTTTTGG
AGTTCGGTGGGGGTAGCACTAGTGGTTTTCTTGCTTGCATGGTCTTGGAGGAATCNCCTGAAATATCAGAGAAAGCGGCT
ATAATGGATTAATTTTTCGGAAGATTTTCGACTCTGGACCCCCTTCAAACTTGTTTCTTCTTCTTGATAGGATGTACATA
TGTGATGGGTGATGATGTAACTTAAATGTGATGGGTAATTATGTAACTTTAAATCCTAGGATAAAGCAATTTTCAGCTAC
ATTTCACATTATGTTTTACAATAGCCAATTGTTGCCTCGCAAGAGGGATGGCTAATTTCAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54269.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis