Browse Element(s) Details


Os.54299.1.S1_at

Description gb:AK105312.1
DB_XREF= gi:32990521
TID=Os.54299.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.54299 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-D06, full insert sequence.
FL= gb:AK105312.1 gb:AK103188.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1088011/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10840NANA6+5652539..5652943hypothetical protein
LOC_Os06g10850Os.56712.1.S1_at11/116+5656851..5660264Lipase family protein, expressed
LOC_Os06g10860OsAffx.27558.1.S1_at11/116+5662969..5664310Cytokinin-O-glucosyltransferase 1, putative
LOC_Os06g10870NANA6+5665157..5666014transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g10880Os.54299.1.S1_at11/116+5676158..5681034bZIP transcription factor family protein, expressed
LOC_Os06g10890Os.12873.1.S1_at3/116+5687803..5689348expressed protein
LOC_Os06g10900OsAffx.27559.2.S1_x_at11/116+5692808..5693650scarecrow 3 protein, putative
LOC_Os06g10900OsAffx.27559.1.S1_x_at7/116+5692808..5693650scarecrow 3 protein, putative
LOC_Os06g10910Os.53557.1.S1_at11/116+5700640..5703992Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10910OsAffx.15364.2.S1_x_at1/116+5700640..5703992Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10920OsAffx.15362.1.S1_at11/116+5704392..5706867Xyloglucan fucosyltransferase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006950biological_processresponse to stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54299.1.S1_at--869--1331Chr06:5680506..5680530 (25 bp)
AGAGAATCACTCAGCAACTTGGACC
LOC_Os06g10880
Os.54299.1.S1_at--366--2791Chr06:5680538..5680562 (25 bp)
AAGAGATTTTGCCTCCGACGAACAC
LOC_Os06g10880
Os.54299.1.S1_at--23--611Chr06:5680664..5680686 (23 bp)
ATGCTGAAGCCAGAGTCTCCGGTTT
LOC_Os06g10880
Os.54299.1.S1_at--690--10731Chr06:5680710..5680734 (25 bp)
TTGCTTCTCTCCTTGTTGGTGAATG
LOC_Os06g10880
Os.54299.1.S1_at--862--811Chr06:5680732..5680756 (25 bp)
ATGGTGATGGCTCAGTCTCTTGGAC
LOC_Os06g10880
Os.54299.1.S1_at--906--5251Chr06:5680761..5680785 (25 bp)
GAATGCTGGCGTCGATTACTCACTA
LOC_Os06g10880
Os.54299.1.S1_at--297--4991Chr06:5680877..5680901 (25 bp)
GCATGCCATCTGTGTTTGTTGTTTT
LOC_Os06g10880
Os.54299.1.S1_at--911--4971Chr06:5680914..5680938 (25 bp)
GCATCTGCTCTGTATGTTGCTGTTG
LOC_Os06g10880
Os.54299.1.S1_at--693--6671Chr06:5680929..5680953 (25 bp)
GTTGCTGTTGCGTTGACATGTCATC
LOC_Os06g10880
Os.54299.1.S1_at--922--751Chr06:5680946..5680970 (25 bp)
ATGTCATCCCGTTTACAGTTCAGTG
LOC_Os06g10880
Os.54299.1.S1_at--448--1111Chr06:5680967..5680991 (25 bp)
AGTGATTCTGTTCTGTACCCAAGTT
LOC_Os06g10880
Target Sequence 
AGAGAATCACTCAGCAACTTGGACCAAAGGCAAAGAGATTTTGCCTCCGACGAACACTGACTGGTCCATGCTGAAGCCAG
AGTCTCCGGTTTCGCCGTGGCGCTCAGCTTCAGAGTTGCTTCTCTCCTTGTTGGTGAATGGTGATGGCTCAGTCTCTTGG
ACGGTCGAATGCTGGCGTCGATTACTCACTAGGTTTAGCTGCGAGATCGTTGCGTGAGCAAAGGCATACTATCTAATCTG
TTTAACTCCTTATTTAGGGAAATCTGGCATGGTGAAAACGGGGCATGCCATCTGTGTTTGTTGTTTTTGTGCAGCTGTTG
CATCTGCTCTGTATGTTGCTGTTGCGTTGACATGTCATCCCGTTTACAGTTCAGTGATTCTGTTCTGTACCCAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54299.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis