Browse Element(s) Details


Os.54308.1.S1_at

Description gb:AK103244.1
DB_XREF= gi:32988453
TID=Os.54308.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54308 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033123I23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033123I23, full insert sequence.
FL= gb:AK103244.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1751011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17450Os.47468.1.A1_s_at11/113+9682748..9686229expressed protein
LOC_Os03g17450Os.46888.1.S1_at11/113+9682748..9686229expressed protein
LOC_Os03g17460Os.38428.1.S1_at11/113+9687259..9689143IN2-1 protein, putative, expressed
LOC_Os03g17470Os.27671.1.S1_at11/113+9691275..9693994IN2-1 protein, putative, expressed
LOC_Os03g17480Os.2376.1.S1_at9/113+9696304..9698958IN2-1 protein, putative, expressed
LOC_Os03g17490Os.48944.1.A1_at11/113+9700976..9704055expressed protein
LOC_Os03g17500Os.52075.1.S1_at11/113+9704342..9706595expressed protein
LOC_Os03g17510Os.54308.1.S1_at11/113+9709492..9711997pentatricopeptide, putative, expressed
LOC_Os03g17520Os.6197.1.S1_at11/113+9712198..9716610CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase family protein, expressed
LOC_Os03g17530OsAffx.25122.1.S1_at11/113+9718076..9718633hypothetical protein
LOC_Os03g17540Os.40027.1.A1_at10/113+9722817..9729772TBC domain containing protein, expressed
LOC_Os03g17540Os.27859.1.S1_at1/113+9722817..9729772TBC domain containing protein, expressed
LOC_Os03g17550Os.23533.1.S1_at11/113+9730756..9734808Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os03g17560OsAffx.25123.1.S1_at11/113+9736057..9738381expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54308.1.S1_at--622--4471Chr03:9709960..9709984 (25 bp)
GCCTGAAAGCACATCGGCATTTTGG
LOC_Os03g17510
Os.54308.1.S1_at--854--491Chr03:9709922..9709946 (25 bp)
ATCGGATTCCATACGCCATTATGTG
LOC_Os03g17510
Os.54308.1.S1_at--261--6411Chr03:9709885..9709909 (25 bp)
GATCTGACCAATTATCAAACCCTAG
LOC_Os03g17510
Os.54308.1.S1_at--492--5911Chr03:9709826..9709850 (25 bp)
GAGCTTTGCTACCACAATCTTCAAA
LOC_Os03g17510
Os.54308.1.S1_at--799--4112Chr03:9709796..9709820 (25 bp)
CGAAGTGTATGATCTTGAGCTCTAA
LOC_Os03g17510
Os.54308.1.S1_at--321--9771Chr03:9709764..9709788 (25 bp)
TAAGGCCAACAGTTACTACAGCAAC
LOC_Os03g17510
Os.54308.1.S1_at--1125--5211Chr03:9709690..9709714 (25 bp)
GAATTTTCAGGAAGTGCCTCCACAA
LOC_Os03g17510
Os.54308.1.S1_at--422--7291Chr03:9709677..9709701 (25 bp)
GTGCCTCCACAAGTTAAATCTCAGT
LOC_Os03g17510
Os.54308.1.S1_at--151--6951Chr03:9709598..9709622 (25 bp)
GTAGTTGTTCTAGCTTCAGTGTTTT
LOC_Os03g17510
Os.54308.1.S1_at--710--9911Chr03:9709556..9709580 (25 bp)
TACTGGATCATTTCTTTAGCCCACC
LOC_Os03g17510
Os.54308.1.S1_at--950--9991Chr03:9709540..9709564 (25 bp)
TAGCCCACCATGCTTTTTTGCATTT
LOC_Os03g17510
Target Sequence 
GCCTGAAAGCACATCGGCATTTTGGAATTATTTGGACCATCGGATTCCATACGCCATTATGTGGTCAATTATATTGATCT
GACCAATTATCAAACCCTAGGATGACAAAGGAAAATGAGAACTGGAAACAATAAGAGCTTTGCTACCACAATCTTCAAAC
CTTTCGAAGTGTATGATCTTGAGCTCTAATTTTTAATAAGGCCAACAGTTACTACAGCAACAGGAAAGTCAATGATTACA
AAAATGATGAAAGCAGTTGCATTCTGATTTGAATTTTCAGGAAGTGCCTCCACAAGTTAAATCTCAGTGTTTGATGAAAC
ACCAAAAGAGCAGCATACAAAAGTTAGTTCAGTTCATCAAAAGTAGTTGTTCTAGCTTCAGTGTTTTTATCTCATGAAAA
TCACTACTGGATCATTTCTTTAGCCCACCATGCTTTTTTGCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54308.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis