Browse Element(s) Details


Os.54353.1.S1_at

Description gb:AK103589.1
DB_XREF= gi:32988798
TID=Os.54353.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54353 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033133C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033133C07, full insert sequence.
FL= gb:AK103589.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0437011/11leucine-rich repeat transmembrane protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04330Os.34404.1.S1_at11/116+1837613..1841800expressed protein
LOC_Os06g04340NANA6+1843992..1847536expressed protein
LOC_Os06g04350OsAffx.4717.1.S1_at10/116+1849165..1852812expressed protein
LOC_Os06g04350Os.51695.1.S1_at2/116+1849165..1852812expressed protein
LOC_Os06g04360Os.51695.1.S1_at10/116+1856524..1860054expressed protein
LOC_Os06g04370Os.54353.1.S1_at11/116+1863558..1867212leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os06g04380Os.6080.1.S1_at11/116+1871647..1874910Glycine cleavage T-protein containing protein, expressed
LOC_Os06g04390Os.11342.1.S1_at11/116+1875621..1879228expressed protein
LOC_Os06g04390OsAffx.16554.1.S1_at1/116+1875621..1879228expressed protein
LOC_Os06g04400OsAffx.27453.1.S1_at11/116+1883183..1883512hypothetical protein
LOC_Os06g04410OsAffx.4718.1.S1_at11/116+1890152..1891189hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54353.1.S1_at--1096--371Chr06:1866616..1866640 (25 bp)
ATCACAGGCAGGAGGGCTGTCTCAC
LOC_Os06g04370
Os.54353.1.S1_at--931--4731Chr06:1866642..1866666 (25 bp)
GCTGAAGGTCAGCACAGTTGCCAAT
LOC_Os06g04370
Os.54353.1.S1_at--536--6691Chr06:1866658..1866682 (25 bp)
GTTGCCAATGACCTTGATAGCCTGA
LOC_Os06g04370
Os.54353.1.S1_at--879--2631Chr06:1866691..1866715 (25 bp)
AACCTCAATGGTGTCTTCTCAAGAA
LOC_Os06g04370
Os.54353.1.S1_at--760--51Chr06:1866739..1866763 (25 bp)
ATTGCTGCACTTTGCACAAGCGAGA
LOC_Os06g04370
Os.54353.1.S1_at--195--8391Chr06:1866765..1866789 (25 bp)
GGCGAGCCAGCGTCCAACAATGGAA
LOC_Os06g04370
Os.54353.1.S1_at--243--8671Chr06:1866792..1866816 (25 bp)
TGTGGTTCAGCAACTCAGCAACTGC
LOC_Os06g04370
Os.54353.1.S1_at--562--2891Chr06:1866894..1866918 (25 bp)
AAGGGTAATGATCCAGTTGCCACTG
LOC_Os06g04370
Os.54353.1.S1_at--472--6691Chr06:1866909..1866933 (25 bp)
GTTGCCACTGACATGCTAGTGCTGA
LOC_Os06g04370
Os.54353.1.S1_at--689--10571Chr06:1867131..1867155 (25 bp)
TTCTAATGTAGCAGCTCTGGCCAGC
LOC_Os06g04370
Os.54353.1.S1_at--172--8451Chr06:1867148..1867172 (25 bp)
TGGCCAGCTTTGTAACGGCATTACT
LOC_Os06g04370
Target Sequence 
ATCACAGGCAGGAGGGCTGTCTCACAGCTGAAGGTCAGCACAGTTGCCAATGACCTTGATAGCCTGATCGATGAGAACCT
CAATGGTGTCTTCTCAAGAACTGAGGCAGCTAAGCTTGCTGCCATTGCTGCACTTTGCACAAGCGAGACGGCGAGCCAGC
GTCCAACAATGGAAGCTGTGGTTCAGCAACTCAGCAACTGCCACTGAAGAACTGAAGCTAGCTGATGATGGGATATCTTT
TGGAAACCTTCACCTGAGGTATTTTGTAAGGGTAGTGAAAGGGTAATGATCCAGTTGCCACTGACATGCTAGTGCTGAAC
ATTTTAGTAGTACTGATTAACTAGTCACTCTTTTTCTAATGATCTCACCATTTCATGGTTAGTGTATCACTATCCTTTCA
ACATTAGAATGTTGAAAACTACTGATGTGTTAGATGTTGAACCTTTGGTTCGGTTGATCAGTATGCAATGGATGCTGATT
TGTGAAGCCATCAGGTTCAGAGAGAAATTCAGCATTTCTAATGTAGCAGCTCTGGCCAGCTTTGTAACGGCATTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54353.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis