Browse Element(s) Details


Os.54356.2.S1_at

Description gb:AK108617.1
DB_XREF= gi:32993826
TID=Os.54356.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54356 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-C03, full insert sequence.
FL= gb:AK108617.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6796011/11GPI transamidase component PIG-S, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67900NANA1+39790665..39791009hypothetical protein
LOC_Os01g67910OsAffx.11783.1.S1_x_at8/111+39792113..39793197hypothetical protein
LOC_Os01g67910OsAffx.11783.1.S1_at5/111+39792113..39793197hypothetical protein
LOC_Os01g67920Os.21106.1.S1_at11/111+39794462..39800667TPR Domain containing protein, expressed
LOC_Os01g67930NANA1+39805154..39805511hypothetical protein
LOC_Os01g67940NANA1+39807522..39807902hypothetical protein
LOC_Os01g67950Os.38856.1.A1_s_at11/111+39810631..39811639ubiquitin family protein, putative, expressed
LOC_Os01g67960Os.54356.2.S1_at11/111+39813785..39818947GPI transamidase component PIG-S, putative, expressed
LOC_Os01g67960Os.54356.1.S1_at10/111+39813785..39818947GPI transamidase component PIG-S, putative, expressed
LOC_Os01g67970Os.52727.1.S1_at11/111+39820022..39826787jmjC domain containing protein, expressed
LOC_Os01g67980Os.4181.1.S1_at10/111+39828211..39829819Cysteine proteinase EP-B 1 precursor, putative, expressed
LOC_Os01g67990OsAffx.29313.1.S1_at1/111+39839109..39841837Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54356.2.S1_at--509--3591Chr01:39815398..39815422 (25 bp)
CATTCCTTTCTTTGTATGTTTCTGA
LOC_Os01g67960
Os.54356.2.S1_at--84--6931Chr01:39815411..39815435 (25 bp)
GTATGTTTCTGAATTCCTCTGTAGA
LOC_Os01g67960
Os.54356.2.S1_at--754--9251Chr01:39815425..39815449 (25 bp)
TCCTCTGTAGAAGTCATGTAGCCAT
LOC_Os01g67960
Os.54356.2.S1_at--840--9611Chr01:39815438..39815462 (25 bp)
TCATGTAGCCATGATGGTTGCTGCA
LOC_Os01g67960
Os.54356.2.S1_at--555--7911Chr01:39815453..39815477 (25 bp)
GGTTGCTGCATACTACAGTTAGCTG
LOC_Os01g67960
Os.54356.2.S1_at--957--6771Chr01:39815470..39815494 (25 bp)
GTTAGCTGCTGTTAGTGTTTATGAC
LOC_Os01g67960
Os.54356.2.S1_at--749--3571Chr01:39815494..39815518 (25 bp)
CATTTAACTGTTATAGATGCACTAA
LOC_Os01g67960
Os.54356.2.S1_at--175--9571Chr01:39815602..39815626 (25 bp)
TCTTCAATTTGTGGTGTATGTTCTT
LOC_Os01g67960
Os.54356.2.S1_at--767--7431Chr01:39815615..39815639 (25 bp)
GTGTATGTTCTTTAGACCAGATTGG
LOC_Os01g67960
Os.54356.2.S1_at--414--5851Chr01:39815629..39815653 (25 bp)
GACCAGATTGGCATCTTTGTATTTA
LOC_Os01g67960
Os.54356.2.S1_at--169--3071Chr01:39815653..39815677 (25 bp)
AATCTTACAGTTCACTCATCCTGAA
LOC_Os01g67960
Target Sequence 
CATTCCTTTCTTTGTATGTTTCTGAATTCCTCTGTAGAAGTCATGTAGCCATGATGGTTGCTGCATACTACAGTTAGCTG
CTGTTAGTGTTTATGACATTTAACTGTTATAGATGCACTAATTCAATATGCAATGAAATTGATAGGTTAATTCAAATGAG
TGGCACTTGGATACATCCATTTCAGCTACAGGACGATCAAAAGTTCTTCAATTTGTGGTGTATGTTCTTTAGACCAGATT
GGCATCTTTGTATTTAATCTTACAGTTCACTCATCCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54356.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis