Browse Element(s) Details


Os.54358.1.S1_at

Description gb:AK103644.1
DB_XREF= gi:32988853
TID=Os.54358.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54358 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033135A20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033135A20, full insert sequence.
FL= gb:AK103644.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1795411/11transposon protein, putative, Pong sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17920NANA11+10035610..10036173hypothetical protein
LOC_Os11g17930Os.11263.1.A1_at11/1111+10046204..10047642expressed protein
LOC_Os11g17940OsAffx.31032.1.S1_at10/1111+10053756..10054910hypothetical protein
LOC_Os11g17954Os.54358.1.S1_at11/1111+10059734..10064080transposon protein, putative, Pong sub-class, expressed
LOC_Os11g17954OsAffx.9060.1.S1_at1/1111+10059734..10064080transposon protein, putative, Pong sub-class, expressed
LOC_Os11g17954OsAffx.27865.1.S1_x_at1/1111+10059734..10064080transposon protein, putative, Pong sub-class, expressed
LOC_Os11g17970OsAffx.18909.1.S1_at11/1111+10074214..10080701POT family protein, expressed
LOC_Os11g17970OsAffx.18909.1.S1_x_at11/1111+10074214..10080701POT family protein, expressed
LOC_Os11g17980OsAffx.31033.1.S1_at10/1111+10081039..10081907hypothetical protein
LOC_Os11g17990Os.46012.3.S1_x_at5/1111+10085974..10091655retrotransposon protein, putative, unclassified
LOC_Os11g17990Os.46012.2.S1_x_at3/1111+10085974..10091655retrotransposon protein, putative, unclassified
LOC_Os11g17990Os.46012.3.S1_at2/1111+10085974..10091655retrotransposon protein, putative, unclassified
LOC_Os11g17990Os.54691.1.S1_x_at1/1111+10085974..10091655retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54358.1.S1_at--509--5351Chr11:10062397..10062421 (25 bp)
GAAGATATTATACGTCCTGAAGGAA
LOC_Os11g17954
Os.54358.1.S1_at--105--3291Chr11:10062371..10062395 (25 bp)
CAAAGCTGCTAAGGCGCGGCGTAAT
LOC_Os11g17954
Os.54358.1.S1_at--809--2311Chr11:10062253..10062277 (25 bp)
AAAGGTCGCGATGAGCTACTGGAGA
LOC_Os11g17954
Os.54358.1.S1_at--446--3911Chr11:10062235..10062259 (25 bp)
CTGGAGACTCAGAGGCGTGTTTCTA
LOC_Os11g17954
Os.54358.1.S1_at--1158--2411Chr11:10062193..10062217 (25 bp)
AAAAGGTTAGCTCACCTGGCAGCCA
LOC_Os11g17954
Os.54358.1.S1_at--693--10151Chr11:10059939..10059963 (25 bp)
TATCGAAGATGCTCATTTTGGCTGC
LOC_Os11g17954
Os.54358.1.S1_at--565--4931Chr11:10059916..10059940 (25 bp)
GCTTGTTTTGGCAGTGCTTCAGCAA
LOC_Os11g17954
Os.54358.1.S1_at--868--3551Chr11:10059875..10059899 (25 bp)
CATAATTTTCAGTAATCCACCGATT
LOC_Os11g17954
Os.54358.1.S1_at--95--5491Chr11:10059839..10059863 (25 bp)
GAACTTGTGTTCTAACTATCTACTC
LOC_Os11g17954
Os.54358.1.S1_at--460--3751Chr11:10059817..10059841 (25 bp)
CTCAGTATGTCGTTGTATGGGTCAC
LOC_Os11g17954
Os.54358.1.S1_at--1138--8751Chr11:10059804..10059828 (25 bp)
TGTATGGGTCACTGTTATGGCCTAT
LOC_Os11g17954
Target Sequence 
GAAGATATTATACGTCCTGAAGGAACCAAAGCTGCTAAGGCGCGGCGTAATGGTAAAGACAAACGCAAAAGGAAGGCAAA
GGTTTATCTATCGGATATGGATGATGAGATTGACAAGCCTAAAGAAGTTCAGAACATGGCAGATAAAGGTCGCGATGAGC
TACTGGAGACTCAGAGGCGTGTTTCTAGTGAGAATCTTGAATCAAAAAGGTTAGCTCACCTGGCAGCCATGGAGCACAAG
GAGGCGGTTATGTTGGAAACATATCGGGCTCTCATGTTGCAAGATACAAAAGATATGCCTGATGATGTCAGATTTGAGCA
TGTGATGGCATTGAAGAGTATGAGGGAAAAGTTGTTTCCTAAAACTAAGGTATCGAAGATGCTCATTTTGGCTGCTTGTT
TTGGCAGTGCTTCAGCAAGAGAAGCTACTTATTACATAATTTTCAGTAATCCACCGATTTTATCAAAACAGAACTTGTGT
TCTAACTATCTACTCAGTATGTCGTTGTATGGGTCACTGTTATGGCCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54358.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis