Browse Element(s) Details


Os.54365.1.S1_at

Description gb:AK103672.1
DB_XREF= gi:32988881
TID=Os.54365.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54365 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033136A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033136A05, full insert sequence.
FL= gb:AK103672.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4621011/11esterase/lipase/thioesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46170OsAffx.11109.1.S1_at4/115+26693587..26694873hypothetical protein
LOC_Os05g46180OsAffx.15123.2.S1_at1/115+26697243..26698535hypothetical protein
LOC_Os05g46190NANA5+26708783..26710129expressed protein
LOC_Os05g46200Os.14570.1.S1_at11/115+26711104..26718236Glycosyl hydrolases family 35 protein, expressed
LOC_Os05g46210Os.54365.1.S1_at11/115+26718390..26722006esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os05g46220Os.49242.1.S1_at11/115+26722589..26725794Mitochondrial carrier protein, expressed
LOC_Os05g46230Os.15241.1.S1_at11/115+26725801..26729200Nucleosome assembly protein containing protein, expressed
LOC_Os05g46240Os.12856.1.S1_x_at11/115+26732360..26735467expressed protein
LOC_Os05g46250Os.53675.1.S1_at11/115+26737462..26740223expressed protein
LOC_Os05g46250OsAffx.15124.1.S1_at9/115+26737462..26740223expressed protein
LOC_Os05g46260Os.8729.1.S1_at11/115+26741375..26745667expressed protein
LOC_Os05g46270Os.4469.1.S1_at11/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46270Os.4469.1.S2_at11/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46270Os.27414.2.S1_x_at1/115+26745364..26750134XPG I-region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54365.1.S1_at--140--2071Chr05:26720384..26720408 (25 bp)
ACTTGCACTCTGTTGTATCATACTT
LOC_Os05g46210
Os.54365.1.S1_at--104--9751Chr05:26720429..26720453 (25 bp)
TAATTGGTCTTGTTGGGCACAGCAA
LOC_Os05g46210
Os.54365.1.S1_at--279--4251Chr05:26720977..26721001 (25 bp)
CCGTGCTTTTGTATGCTTCCATGAA
LOC_Os05g46210
Os.54365.1.S1_at--528--5431Chr05:26720999..26721023 (25 bp)
GAACCATGATATTCCTGTCATTGTC
LOC_Os05g46210
Os.54365.1.S1_at--941--8731Chr05:26721020..26721044 (25 bp)
TGTCAACATTTCTGGACGCTTTGCG
LOC_Os05g46210
Os.54365.1.S1_at--434--2851Chr05:26721365..26721389 (25 bp)
AAGTCTGAAAGATCGGCTGAGCACA
LOC_Os05g46210
Os.54365.1.S1_at--308--8911Chr05:26721382..26721406 (25 bp)
TGAGCACAGATACCCTTCTTTCAAG
LOC_Os05g46210
Os.54365.1.S1_at--642--2731Chr05:26721416..26721531 (25 bp)
AAGCAAATGCTGCAGGGTCCTCACA
LOC_Os05g46210
Os.54365.1.S1_at--54--5051Chr05:26721619..26721643 (25 bp)
GCAGAAGCCAATCATCGCTACACAG
LOC_Os05g46210
Os.54365.1.S1_at--329--2711Chr05:26721662..26721686 (25 bp)
AAGCATTTGTACTGGACTTCATCAA
LOC_Os05g46210
Os.54365.1.S1_at--14--1971Chr05:26721729..26721753 (25 bp)
ACTGTTTGACCTTTGCAATCCTTGA
LOC_Os05g46210
Target Sequence 
ACTTGCACTCTGTTGTATCATACTTCACAGAACAGGAATATAATATAATTGGTCTTGTTGGGCACAGCAAAGGAGGAAAT
GCCGTGCTTTTGTATGCTTCCATGAACCATGATATTCCTGTCATTGTCAACATTTCTGGACGCTTTGCGTTAGAGCGTGG
TATTGATGGGCGCCTGGGGAAAAATTTCATGCAGAGAATAAAGAAAGATGGATACATAGATGTCAGGAACAGAAAAGGGG
AGTTTGAGTACCAGGTGACAGAGGAAAGTCTGAAAGATCGGCTGAGCACAGATACCCTTCTTTCAAGCCGNTCCATAAGC
AAATGCTGCAGGGTCCTCACAATCCATGGCTNCAAGGATGAAATTGNTCCGGTGGAAGACGCCCNTGATGTTCGCGGCAA
ATATNCCCAACCATGAGCTGCACATAATCGCAGAAGCCAATCATCGCTACACAGGCCATGNAGAAAGAGCTGNAAGCATT
TGTACTGGACTTCATCAAGTCCCAANCCAATTTNTCGTCGTCCTTGCGCCCGAAGTTGTAACTGTTTGACCTTTGCAATC
CTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis