Browse Element(s) Details


Os.54374.1.S1_at

Description gb:AK103733.1
DB_XREF= gi:32988942
TID=Os.54374.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54374 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033138F17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033138F17, full insert sequence.
FL= gb:AK103733.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4229011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42250Os.6411.2.S1_at11/117+25285846..25288436Strictosidine synthase family protein, expressed
LOC_Os07g42260Os.6411.1.S1_a_at11/117+25287562..25292046Proteasome subunit alpha type 6, putative, expressed
LOC_Os07g42270NANA7+25293079..25293903hypothetical protein
LOC_Os07g42280Os.4972.1.S1_at11/117+25296748..25304049von Willebrand factor type A domain containing protein, expressed
LOC_Os07g42280OsAffx.5607.1.S1_x_at11/117+25296748..25304049von Willebrand factor type A domain containing protein, expressed
LOC_Os07g42280Os.36147.1.S1_at1/117+25296748..25304049von Willebrand factor type A domain containing protein, expressed
LOC_Os07g42290Os.54374.1.S1_at11/117+25307339..25309942expressed protein
LOC_Os07g42300Os.12835.2.S1_a_at9/117+25311858..25314982Elongation factor 1-beta, putative, expressed
LOC_Os07g42310OsAffx.16683.1.S1_at11/117+25318861..25321486Lung seven transmembrane receptor family protein, expressed
LOC_Os07g42330OsAffx.5608.1.S1_at11/117+25325306..25326152SPX domain containing protein, expressed
LOC_Os07g42340NANA7+25328412..25328666hypothetical protein
LOC_Os07g42354OsAffx.28872.1.S1_at10/117+25331784..25337035hypothetical protein
LOC_Os07g42354Os.51960.1.S1_at2/117+25331784..25337035hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54374.1.S1_at--332--5451Chr07:25309086..25309110 (25 bp)
GAACGCTCGACCGAGTAATGCTGCG
LOC_Os07g42290
Os.54374.1.S1_at--654--751Chr07:25309430..25309454 (25 bp)
ATGTAGACCGAGACGCACGATTCAA
LOC_Os07g42290
Os.54374.1.S1_at--1090--2011Chr07:25309568..25309592 (25 bp)
ACTACATGATGGTGGCCTGGTGTCC
LOC_Os07g42290
Os.54374.1.S1_at--747--4471Chr07:25309582..25309606 (25 bp)
GCCTGGTGTCCTGATTTACGCGGAG
LOC_Os07g42290
Os.54374.1.S1_at--742--10771Chr07:25309624..25309648 (25 bp)
TTGATGCCACAATAATCCCCATTTG
LOC_Os07g42290
Os.54374.1.S1_at--147--3051Chr07:25309637..25309661 (25 bp)
AATCCCCATTTGTTCATGAGGTTCA
LOC_Os07g42290
Os.54374.1.S1_at--346--4111Chr07:25309671..25309695 (25 bp)
CGAATCGATCGCACGGGACAACATA
LOC_Os07g42290
Os.54374.1.S1_at--1046--9851Chr07:25309694..25309718 (25 bp)
TACAGAACCGAATGCGATGCGCGAC
LOC_Os07g42290
Os.54374.1.S1_at--482--6351Chr07:25309709..25309733 (25 bp)
GATGCGCGACGGTGTAATTCTGAAC
LOC_Os07g42290
Os.54374.1.S1_at--154--9691Chr07:25309739..25309763 (25 bp)
TCAAACGTCGACTGGCTGGCTAGTT
LOC_Os07g42290
Os.54374.1.S1_at--673--6832Chr07:25309856..25309880 (25 bp)
GTTTCACCATATAGTACTACTCCCC
LOC_Os07g42290
Target Sequence 
GAACGCTCGACCGAGTAATGCTGCGGCGTCGTCGTCGAGGAAATACTATCTTGAGGATAAGCCGAGGGAGAAGATGCAAA
GGGAGCATCTCCATGATGATGAAGATGATGATGAGAATGCAGAAGATATCTTTAAATGGGACAAAACTGATTCAGATTTC
ATTGTTCTGGAGATGTAGACCGAGACGCACGATTCAATGCGATCATTATTGTTTGCACAATGACTACATGATGGTGGCCT
GGTGTCCTGATTTACGCGGAGGAAAATTCGCAGTAATTTTGATGCCACAATAATCCCCATTTGTTCATGAGGTTCAGTTG
AATGGCGAATCGATCGCACGGGACAACATACAGAACCGAATGCGATGCGCGACGGTGTAATTCTGAACGAAGATCAAACG
TCGACTGGCTGGCTAGTTCAATCATTATTGGATTTGAGCTGAAAATAGGAGAAATTTTCAAGCTCTGTTATCTTTTTCTT
TTTTTCAGATTTCAGATACAGTTGGTGTACGTTTCACCATATAGTACTACTCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54374.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis