Browse Element(s) Details


Os.54442.1.S1_x_at

Description gb:AK105177.1
DB_XREF= gi:32990386
TID=Os.54442.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54442 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-A12, full insert sequence.
FL= gb:AK105177.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g117401/11Plastidic ATP/ADP-transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g11720NANA2+6038439..6039470hydrolase, alpha/beta fold family protein, expressed
LOC_Os02g11730Os.35344.18.S1_x_at10/112+6041607..6047544transposon protein, putative, Mutator sub-class
LOC_Os02g11730Os.35344.3.S1_x_at10/112+6041607..6047544transposon protein, putative, Mutator sub-class
LOC_Os02g11730OsAffx.22940.5.S1_x_at3/112+6041607..6047544transposon protein, putative, Mutator sub-class
LOC_Os02g11740Os.14185.2.S1_a_at11/112+6057110..6060281Plastidic ATP/ADP-transporter, putative, expressed
LOC_Os02g11740Os.54442.1.S1_x_at1/112+6057110..6060281Plastidic ATP/ADP-transporter, putative, expressed
LOC_Os02g11740Os.54442.1.S1_at1/112+6057110..6060281Plastidic ATP/ADP-transporter, putative, expressed
LOC_Os02g11750Os.5590.1.S1_at11/112+6062276..6066705RNA recognition motif family protein, expressed
LOC_Os02g11760Os.7289.2.S1_at11/112+6069160..6075802PDR5-like ABC transporter, putative, expressed
LOC_Os02g11770Os.8558.1.S1_at4/112+6078566..6079008hypothetical protein
LOC_Os02g11780Os.39020.1.S1_at11/112+6083116..6092493Transcription factor S-II, central domain containing protein, expressed
LOC_Os02g11780Os.17376.1.S1_at10/112+6083116..6092493Transcription factor S-II, central domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0005471molecular_functionATP:ADP antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54442.1.S1_x_at--484--7091Chr11:11738436..11738460 (25 bp)
GTCACACCGGATCCGGCCGCTTGGA
NONE
Os.54442.1.S1_x_at--1066--8592Chr11:11738267..11738291 (25 bp)
TGGTCTTCCTCCAGCAGCAGTGCAA
NONE
Os.54442.1.S1_x_at--1145--10652Chr11:11738265..11738286 (22 bp)
TTCCTCCAGCAGCAGTGCAAAGCCA
NONE
Os.54442.1.S1_x_at--345--3411Chr11:11738173..11738280 (25 bp)
CAGCAGCAGTGCAAAGCCAAGGTCT
NONE
Os.54442.1.S1_x_at--113--9031Chr11:11738164..11738271 (25 bp)
TGCAAAGCCAAGGTCTGCATGGTGG
NONE
Os.54442.1.S1_x_at--409--2871Chr11:11738120..11738144 (25 bp)
AAGGGCGTGGAGACGAACACCGCCA
NONE
Os.54442.1.S1_x_at--186--4672Chr02:6057455..6057571 (24 bp)
GCGTGGAGACGAACACCGCCAAGGT
LOC_Os02g11740
Os.54442.1.S1_x_at--846--6191Chr11:11738087..11738111 (25 bp)
GAGGCAGTCGGCGACGACCTCCAAG
NONE
Os.54442.1.S1_x_at--747--9191Chr11:11738068..11738092 (25 bp)
TCCAAGGGCTCCTCCTAAAGGAATA
NONE
Os.54442.1.S1_x_at--314--5231Chr11:11738048..11738072 (25 bp)
GAATAAAACGCTAGCTATGAACTTG
NONE
Os.54442.1.S1_x_at--414--7091Chr11:11737988..11738012 (25 bp)
GTCACAAACAAGGTATCTAAGCAAT
NONE
Target Sequence 
GTCACACCGGATCCGGCCGCTTGGAGGTCGGGGCCGCCAGATCCAGCCACCACGCGCGGCAGCAGCGCCCCTCCTCCTTT
GCGTCACGCCGGATCCGGCCACCACGTGCAGCAGCAGCTCCTCCTCCGGCCTTCTTCCGGCAGCAGCACCACGGCAACAG
CTCCTCCTCTGGTCTTCCTCCAGCAGCAGTGCAAAGCCAAGGTCTGCATGGTGGGGTTCTAAATGGGGTTGGGAAGGGCG
TGGAGACGAACACCGCCAAGGTGGAGGAGGCAGTCGGCGACGACCTCCAAGGGCTCCTCCTAAAGGAATAAAACGCTAGC
TATGAACTTGTAGCTTGAACAAACAAAATGTATATGAATCAAAAGGTCACAAACAAGGTATCTAAGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54442.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis