Browse Element(s) Details


Os.54486.1.S1_at

Description gb:AK105314.1
DB_XREF= gi:32990523
TID=Os.54486.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54486 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-D11, full insert sequence.
FL= gb:AK105314.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0332011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03270Os.47463.1.S1_x_at6/115+1300906..1304606transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g03270Os.14491.2.S1_x_at5/115+1300906..1304606transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g03280Os.46053.2.S1_x_at10/115+1306554..1309786transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g03290NANA5+1310987..1314318transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g03299NANA5+1318721..1318933hypothetical protein
LOC_Os05g03310OsAffx.26711.1.S1_at11/115+1323325..1325532hypothetical protein
LOC_Os05g03320Os.54486.1.S1_at11/115+1326518..1332705expressed protein
LOC_Os05g03320Os.38233.1.S2_at1/115+1326518..1332705expressed protein
LOC_Os05g03330OsAffx.26711.2.S1_at10/115+1337065..1339039hypothetical protein
LOC_Os05g03339NANA5+1343431..1343643hypothetical protein
LOC_Os05g03350NANA5+1353872..1355110retrotransposon protein, putative, unclassified
LOC_Os05g03360NANA5+1355741..1361890retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54486.1.S1_at--837--6871Chr05:1327196..1327220 (25 bp)
GTATTCCCATTCTATGCACACATGA
LOC_Os05g03320
Os.54486.1.S1_at--375--9691Chr05:1327154..1327178 (25 bp)
TCAAATCTTCATATGGCCGGTGGTA
LOC_Os05g03320
Os.54486.1.S1_at--137--7851Chr05:1327019..1327043 (25 bp)
GGTACTGCTGCACTTACACTACTGA
LOC_Os05g03320
Os.54486.1.S1_at--445--10871Chr05:1326861..1326997 (25 bp)
TTGGCAGGCAGGTGCTCAGTTTGTT
LOC_Os05g03320
Os.54486.1.S1_at--854--10771Chr05:1326841..1326865 (25 bp)
TTGTTGTGGAGCACGACCATTTTCC
LOC_Os05g03320
Os.54486.1.S1_at--954--2731Chr05:1326804..1326828 (25 bp)
AAGAACGTCGTTTGCCCGCAATGGA
LOC_Os05g03320
Os.54486.1.S1_at--161--6771Chr05:1326778..1326802 (25 bp)
GTTAATTTTGCTGGCCTGATTCTGA
LOC_Os05g03320
Os.54486.1.S1_at--595--6571Chr05:1326761..1326785 (25 bp)
GATTCTGACCTCTCCAAGTGTTGGA
LOC_Os05g03320
Os.54486.1.S1_at--557--4751Chr05:1326718..1326742 (25 bp)
GCTGATGTGCTTTTGCTGCGTATTA
LOC_Os05g03320
Os.54486.1.S1_at--1014--831Chr05:1326648..1326672 (25 bp)
ATGGACCTGACATGTTGGAACCTTA
LOC_Os05g03320
Os.54486.1.S1_at--451--1971Chr05:1326564..1326588 (25 bp)
ACTGAACTCACCACTTGTATGCTGA
LOC_Os05g03320
Target Sequence 
GTATTCCCATTCTATGCACACATGATGGAGCGTGATCATGTTTCAAATCTTCATATGGCCGGTGGTACTGAGAATGGATT
GAAGGATAAATGGTGTTCTCCAGTTGGCGTTAGTTTGTTGGGAAAACCACCACAACTAACAAGTACTAGTTATCAATCCA
GAACCAGAAGGCTATTTGGTACTGCTGCACTTACACTACTGAAGACCTTAAAGCGTGCATGAGTTGGCAGGCAGGTGCTC
AGTTTGTTGTGGAGCACGACCATTTTCCCTGCGACGAGACAAGAACGTCGTTTGCCCGCAATGGATGTTAATTTTGCTGG
CCTGATTCTGACCTCTCCAAGTGTTGGATATGTATGTAGCAGTCGTGCTGATGTGCTTTTGCTGCGTATTATGATATGTA
GTGCTTGCTTCAAGTGTTCTGTTATGAAGCTTGACAATGGACCTGACATGTTGGAACCTTAAAAGGTTATCCTATTTAAT
TGTAGGGTCGAATCGAGGATACACAGCTCCATTGGATTTTACTGAACTCACCACTTGTATGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54486.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis