Browse Element(s) Details


OsAffx.26711.1.S1_at

Description tigr:9633.m00254
TID=OsAffx.26711.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0331011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03270Os.47463.1.S1_x_at6/115+1300906..1304606transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g03270Os.14491.2.S1_x_at5/115+1300906..1304606transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g03280Os.46053.2.S1_x_at10/115+1306554..1309786transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g03290NANA5+1310987..1314318transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g03299NANA5+1318721..1318933hypothetical protein
LOC_Os05g03310OsAffx.26711.1.S1_at11/115+1323325..1325532hypothetical protein
LOC_Os05g03320Os.54486.1.S1_at11/115+1326518..1332705expressed protein
LOC_Os05g03320Os.38233.1.S2_at1/115+1326518..1332705expressed protein
LOC_Os05g03330OsAffx.26711.2.S1_at10/115+1337065..1339039hypothetical protein
LOC_Os05g03339NANA5+1343431..1343643hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26711.1.S1_at--136--9731Chr05:1324864..1324888 (25 bp)
TCAATTGTCGGTGTGAACCTCGGGA
LOC_Os05g03310
OsAffx.26711.1.S1_at--976--2291Chr05:1324959..1324983 (25 bp)
AAATGGGCTCATTACCTTCTGAGAT
LOC_Os05g03310
OsAffx.26711.1.S1_at--7--8911Chr05:1324978..1325002 (25 bp)
TGAGATTGCCTGTCTTCAGGGCTCA
LOC_Os05g03310
OsAffx.26711.1.S1_at--795--7831Chr05:1325140..1325164 (25 bp)
GGTACAGTAGCTTTCCATGGGCAAT
LOC_Os05g03310
OsAffx.26711.1.S1_at--51--8831Chr05:1325205..1325229 (25 bp)
TGTTGTGAACTTGGTGCTATCGCTT
LOC_Os05g03310
OsAffx.26711.1.S1_at--382--4871Chr05:1325220..1325244 (25 bp)
GCTATCGCTTCAGCCAATGGTTGCT
LOC_Os05g03310
OsAffx.26711.1.S1_at--474--2971Chr05:1325235..1325259 (25 bp)
AATGGTTGCTTCAGTTTTCGTGGGA
LOC_Os05g03310
OsAffx.26711.1.S1_at--335--7491Chr05:1325254..1325278 (25 bp)
GTGGGAAATCACATCTCAGCAATCT
LOC_Os05g03310
OsAffx.26711.1.S1_at--627--451Chr05:1325266..1325290 (25 bp)
ATCTCAGCAATCTCAGTCAAGGAAG
LOC_Os05g03310
OsAffx.26711.1.S1_at--706--10011Chr05:1325369..1325393 (25 bp)
TAGAAACTCCCAATGCAGGTGGTAA
LOC_Os05g03310
OsAffx.26711.1.S1_at--1036--2531Chr05:1325449..1325473 (25 bp)
AACTCGGTCTGCGTCAAACTACTGG
LOC_Os05g03310
Target Sequence 
TCAATTGTCGGTGTGAACCTCGGGAGAAACTTGAGCTAGTGGATAGTTTAATGAAAATGAAGGATAATGAGATGACAATG
GAATCAATCAAGGATAAATGGGCTCATTACCTTCTGAGATTGCCTGTCTTCAGGGCTCATCAGCCAACCAAGACCATAAG
AAAGGACTATATAAACAAGGCTCCAACTGTTGGTACAGTAGCTTTCCATGGGCAATACAAAATTGTCGCAAAGGGGGATA
CAGCAAAAACGGAGGCTGTTGTGAACTTGGTGCTATCGCTTCAGCCAATGGTTGCTTCAGTTTTCGTGGGAAATCACATC
TCAGCAATCTCAGTCAAGGAAGAGATAGAAAAGTTTGTCAAGGGGTATTTACTGGACATCAAGGAGGCTAAGGGAGCATA
TGTTGTTGTCATGAAATTTATAGAAACTCCCAATGCAGGTGGTAAAATATTAGATGTCTTGTTTAATACTGAAGTCGGTG
AGGTGTACAAGCAGACAGCAAACTCGGTCTGCGTCAAACTACTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26711.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis