Browse Element(s) Details


Os.54487.1.S1_at

Description gb:AK105315.1
DB_XREF= gi:32990524
TID=Os.54487.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54487 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-E03, full insert sequence.
FL= gb:AK105315.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1645011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16420Os.16952.1.S1_at10/116+9395150..9398082amino acid transporter family protein, putative, expressed
LOC_Os06g16430Os.10726.2.S1_x_at11/116+9399937..9407381FHA domain containing protein, expressed
LOC_Os06g16430Os.10726.2.S1_at11/116+9399937..9407381FHA domain containing protein, expressed
LOC_Os06g16430Os.10726.1.S1_a_at9/116+9399937..9407381FHA domain containing protein, expressed
LOC_Os06g16440OsAffx.27667.1.S1_s_at11/116+9410292..9410756expressed protein
LOC_Os06g16440OsAffx.27667.2.S1_at11/116+9410292..9410756expressed protein
LOC_Os06g16450Os.54487.1.S1_at11/116+9417329..9422052Leucine Rich Repeat family protein, expressed
LOC_Os06g16460OsAffx.15459.1.S1_at11/116+9427383..9428032hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54487.1.S1_at--1121--991Chr06:9417839..9417863 (25 bp)
AGGATTTTTGTTTACTCTCCGGCAT
LOC_Os06g16450
Os.54487.1.S1_at--330--9711Chr06:9417782..9417806 (25 bp)
TCAACGGTGATTTTGTCCCTGACAA
LOC_Os06g16450
Os.54487.1.S1_at--37--5611Chr06:9417664..9417688 (25 bp)
GACAAGGTTTCCATGGATCTCCAAC
LOC_Os06g16450
Os.54487.1.S1_at--531--491Chr06:9417617..9417641 (25 bp)
ATCGGCGCTAGCTGATCTGATCGAG
LOC_Os06g16450
Os.54487.1.S1_at--1082--2431Chr06:9417591..9417615 (25 bp)
AAAAGGTATCCGTTCTCATCATTCC
LOC_Os06g16450
Os.54487.1.S1_at--290--1571Chr06:9417540..9417564 (25 bp)
AGCTAGCTTGTGTGCCAACTCAGTC
LOC_Os06g16450
Os.54487.1.S1_at--903--3171Chr06:9417494..9417518 (25 bp)
CAATCGTTTTGTGTGCCCTTTAGTC
LOC_Os06g16450
Os.54487.1.S1_at--814--771Chr06:9417468..9417492 (25 bp)
ATGTGCTTGTTTCCCTTGAATTTGC
LOC_Os06g16450
Os.54487.1.S1_at--1089--5211Chr06:9417451..9417475 (25 bp)
GAATTTGCATTACTCGGTGTCTTAG
LOC_Os06g16450
Os.54487.1.S1_at--969--291Chr06:9417368..9417392 (25 bp)
ATAGCAGTAGCAGCTCATGTCCGTC
LOC_Os06g16450
Os.54487.1.S1_at--624--771Chr06:9417352..9417376 (25 bp)
ATGTCCGTCTTATGCTACCATGTGT
LOC_Os06g16450
Target Sequence 
AGGATTTTTGTTTACTCTCCGGCATCGCCAACCTCCCAGAATTCAAGGAGCTCGAGTTCAACGGTGATTTTGTCCCTGAC
AAGGTGAGAAAAGCCATTAATGCGCATAAAAGGAAGCCTATTCTTACACACAAGAAGCCACAGCATCACGGGCCAGCACC
AAAAGAGGAAGACGAGACAAGGTTTCCATGGATCTCCAACTTGTTCTCGAAAAAGCAAGAGGATCGGCGCTAGCTGATCT
GATCGAGGAAAAGGTATCCGTTCTCATCATTCCTTCCATTTATCACTCACTCCCAGTCCAGCTAGCTTGTGTGCCAACTC
AGTCGCACGTTCAGATACACGTGCGCAATCGTTTTGTGTGCCCTTTAGTCCATGTGCTTGTTTCCCTTGAATTTGCATTA
CTCGGTGTCTTAGAGTGGTGTGCCGACAAATTATGTGCCAAATCTGAATGTGCACGCATAATATTAAGAGCATAGCAGTA
GCAGCTCATGTCCGTCTTATGCTACCATGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54487.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis