Browse Element(s) Details


Os.54502.1.S1_at

Description gb:AK105452.1
DB_XREF= gi:32990661
TID=Os.54502.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54502 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-125-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-125-C04, full insert sequence.
FL= gb:AK105452.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3840011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38350OsAffx.18046.1.S1_at11/119+22082420..22084416AMP-binding enzyme family protein, expressed
LOC_Os09g38360OsAffx.6518.1.S1_at11/119+22089798..22090877hypothetical protein
LOC_Os09g38370OsAffx.30189.1.S1_at11/119+22091684..22094784Signal peptidase subunit family protein, expressed
LOC_Os09g38370OsAffx.30189.1.S1_s_at10/119+22091684..22094784Signal peptidase subunit family protein, expressed
LOC_Os09g38380OsAffx.30190.1.S1_at11/119+22095603..22096898Eukaryotic aspartyl protease family protein
LOC_Os09g38390NANA9+22098370..22100696PB1 domain containing protein, expressed
LOC_Os09g38400Os.54502.1.S1_at11/119+22104388..22106620expressed protein
LOC_Os09g38410Os.17501.1.A1_at5/119+22107282..22113256Major Facilitator Superfamily protein, expressed
LOC_Os09g38420Os.11564.1.S1_at11/119+22113719..22119480cysteinyl-tRNA synthetase family protein, expressed
LOC_Os09g38429NANA9+22120102..22120353hypothetical protein
LOC_Os09g38440Os.11478.1.S1_at11/119+22129970..22134245SET domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54502.1.S1_at--586--6311Chr09:22106318..22106342 (25 bp)
GATGACGAGGACCAGCCGCCTTCCA
LOC_Os09g38400
Os.54502.1.S1_at--948--2731Chr09:22106348..22106372 (25 bp)
AAGAAATGAGCTAGCCTCCTTCATC
LOC_Os09g38400
Os.54502.1.S1_at--706--3791Chr09:22106383..22106407 (25 bp)
CTCCTCAACTTGTTTCAGTCTGTTG
LOC_Os09g38400
Os.54502.1.S1_at--832--3451Chr09:22106398..22106422 (25 bp)
CAGTCTGTTGTGCTGTTTAGATGAT
LOC_Os09g38400
Os.54502.1.S1_at--29--7891Chr09:22106429..22106453 (25 bp)
GGTTATGGGACCTATGTAGCTTATG
LOC_Os09g38400
Os.54502.1.S1_at--537--751Chr09:22106442..22106466 (25 bp)
ATGTAGCTTATGGTTTGGGTTGTTT
LOC_Os09g38400
Os.54502.1.S1_at--611--8631Chr09:22106457..22106481 (25 bp)
TGGGTTGTTTGGGTCTCTCATAGGA
LOC_Os09g38400
Os.54502.1.S1_at--549--5671Chr09:22106496..22106520 (25 bp)
GACATCTGATGTTAAGCCGTTCTCT
LOC_Os09g38400
Os.54502.1.S1_at--331--8871Chr09:22106502..22106526 (25 bp)
TGATGTTAAGCCGTTCTCTTGTGTT
LOC_Os09g38400
Os.54502.1.S1_at--636--4451Chr09:22106529..22106553 (25 bp)
GCCTTTGTGCATGTAGACGTAAAAT
LOC_Os09g38400
Os.54502.1.S1_at--158--631Chr09:22106552..22106576 (25 bp)
ATGCTGCGGTGTGTTATTTATTGGA
LOC_Os09g38400
Target Sequence 
GATGACGAGGACCAGCCGCCTTCCAAGAAGAAGAAATGAGCTAGCCTCCTTCATCCTGCATCTGCCTCCTCAACTTGTTT
CAGTCTGTTGTGCTGTTTAGATGATGGAACAGGTTATGGGACCTATGTAGCTTATGGTTTGGGTTGTTTGGGTCTCTCAT
AGGAGTAGGAAAACATTTGACATCTGATGTTAAGCCGTTCTCTTGTGTTTTGCCTTTGTGCATGTAGACGTAAAATGCTG
CGGTGTGTTATTTATTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54502.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis