Browse Element(s) Details


Os.54504.1.S1_x_at

Description gb:AK105473.1
DB_XREF= gi:32990682
TID=Os.54504.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54504 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-A03, full insert sequence.
FL= gb:AK105473.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0807010/11expressed protein
LOC_Os04g081101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08034Os.20108.3.S1_at10/114+4262031..4277841Polycomb protein EMBRYONIC FLOWER 2, putative, expressed
LOC_Os04g08034Os.6984.1.S1_at10/114+4262031..4277841Polycomb protein EMBRYONIC FLOWER 2, putative, expressed
LOC_Os04g08034Os.20108.1.S1_a_at9/114+4262031..4277841Polycomb protein EMBRYONIC FLOWER 2, putative, expressed
LOC_Os04g08034OsAffx.18365.1.S1_at1/114+4262031..4277841Polycomb protein EMBRYONIC FLOWER 2, putative, expressed
LOC_Os04g08060OsAffx.3743.1.S1_s_at11/114+4283477..4284505Zinc finger, C2H2 type family protein, expressed
LOC_Os04g08070Os.54504.1.S1_at10/114+4296256..4297594expressed protein
LOC_Os04g08070Os.54504.1.S1_x_at10/114+4296256..4297594expressed protein
LOC_Os04g08080OsAffx.25921.1.S1_at11/114+4306203..4308461hypothetical protein
LOC_Os04g08094NANA4+4311319..4311850NA
LOC_Os04g08110Os.54504.1.S1_x_at1/114+4313792..4314583hypothetical protein
LOC_Os04g08110OsAffx.25922.2.S1_at1/114+4313792..4314583hypothetical protein
LOC_Os04g08120OsAffx.25936.1.S1_s_at11/114+4317877..4319054hypothetical protein
LOC_Os04g08120OsAffx.25936.7.S1_s_at11/114+4317877..4319054hypothetical protein
LOC_Os04g08120OsAffx.25936.2.S1_x_at8/114+4317877..4319054hypothetical protein
LOC_Os04g08120OsAffx.25936.5.S1_x_at2/114+4317877..4319054hypothetical protein
LOC_Os04g08130NANA4+4320076..4321399transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54504.1.S1_x_at--551--2891Chr04:4296727..4296751 (25 bp)
AAGGTGGTGACCACGCCGATCTCAT
LOC_Os04g08070
Os.54504.1.S1_x_at--168--8471Chr04:4296629..4296653 (25 bp)
TGGCGGCGTCAAGAAAGGCTACTTC
LOC_Os04g08070
Os.54504.1.S1_x_at--947--911Chr04:4296614..4296638 (25 bp)
AGGCTACTTCGAGGTGCAGGTGTTC
LOC_Os04g08070
Os.54504.1.S1_x_at--539--3792Chr08:22237639..22237696 (24 bp)
CTCGTCGGCGTGAACAGCTCGGTGT
NONE
Os.54504.1.S1_x_at--71--7472Chr04:4296514..4296538 (25 bp)
GTGTGCGTGTCGACGGCGAAACACC
LOC_Os04g08070
Os.54504.1.S1_x_at--1110--2871Chr04:4296481..4296505 (25 bp)
AAGGGCGGATGCGTGTACTACACTG
LOC_Os04g08070
Os.54504.1.S1_x_at--1151--7431Chr04:4296469..4296493 (25 bp)
GTGTACTACACTGACGACGAGATCG
LOC_Os04g08070
Os.54504.1.S1_x_at--379--4451Chr04:4296305..4296329 (25 bp)
GCCTTCCTTCCGGTGATGATATATA
LOC_Os04g08070
Os.54504.1.S1_x_at--989--231Chr04:4296285..4296309 (25 bp)
ATATAGTTAGTTCTTGGCCTCTTCA
LOC_Os04g08070
Os.54504.1.S1_x_at--843--4451Chr04:4296269..4296293 (25 bp)
GCCTCTTCATGGTCTTCTACATACA
LOC_Os04g08070
Os.54504.1.S1_x_at--67--751Chr04:4296242..4296266 (25 bp)
ATGTTTACATCTTCAGCTTTGCTTT
NONE
Target Sequence 
AAGGTGGTGACCACGCCGATCTCATGCCCCCCGCAGCGCCGCAAGTACCTGGCGGCGGCGCCGGACGGGCGGCTGATGAT
CGTGCTCAAGAACACCAATGGCGGCGTCAAGAAAGGCTACTTCGAGGTGCAGGTGTTCGACGAAATGACGCAACGGTGGG
AGGCGGCGGAGGACATCGGCGAGCTCGCTATCCTCGTCGGCGTGAACAGCTCGGTGTGCGTGTCGACGGCGAAACACCCG
GAGCTCAAGGGCGGATGCGTGTACTACACTGACGACGAGATCGGGAAGGCATGGCTGCGGAGAGAGTACGGGTACAGCAA
CAGCAAGCCGAACGTGGGGGTGTACAGCCTCAAAGACGGCAAGGAGATGAGCATCCCGGGGCTCGGCGAGCACCTCAGCT
GGCCGCCGCCGGCGTGGTTCACGCCTTCCTTCCGGTGATGATATATAGTTAGTTCTTGGCCTCTTCATGGTCTTCTACAT
ACATAATGTTTACATCTTCAGCTTTGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54504.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis