Browse Element(s) Details


Os.5453.1.S1_at

Description gb:AK066786.1
DB_XREF= gi:32976804
TID=Os.5453.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5453 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013075N15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013075N15, full insert sequence.
FL= gb:AK066786.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5550011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55450Os.38395.3.S1_x_at11/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55450Os.38395.4.S1_x_at9/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55450Os.38395.2.S1_x_at9/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55450Os.38395.5.S1_at3/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55450Os.38395.1.S1_at1/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55480Os.49456.1.S1_at10/114+32775229..32780712Zn-finger in ubiquitin-hydrolases and other protein, expressed
LOC_Os04g55490Os.55538.1.S1_at11/114+32782815..32783933expressed protein
LOC_Os04g55500Os.5453.1.S1_at11/114+32787254..32793839expressed protein
LOC_Os04g55510Os.25780.1.S1_s_at11/114+32803766..32809289Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g55520Os.22629.1.S1_at11/114+32811544..32812764AP2 domain containing protein, expressed
LOC_Os04g55530OsAffx.22492.1.S1_at1/114+32815039..32821156retrotransposon protein, putative, unclassified
LOC_Os04g55530OsAffx.22492.1.S1_x_at1/114+32815039..32821156retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5453.1.S1_at--340--8511Chr04:32793302..32793326 (25 bp)
TGGAAGGTCCTCTGGGTGATTTTAA
LOC_Os04g55500
Os.5453.1.S1_at--1129--8311Chr04:32793332..32793356 (25 bp)
GGCTCGGACCAGCATGCTCTAAAAA
LOC_Os04g55500
Os.5453.1.S1_at--210--10451Chr04:32793420..32793444 (25 bp)
TTAGCTTAGCCTTCCATGCTCACAT
LOC_Os04g55500
Os.5453.1.S1_at--335--631Chr04:32793435..32793459 (25 bp)
ATGCTCACATCGTCCTAAATCATGA
LOC_Os04g55500
Os.5453.1.S1_at--101--8411Chr04:32793480..32793504 (25 bp)
GGCCCTTTTGTCCATATTGTTTAGA
LOC_Os04g55500
Os.5453.1.S1_at--513--3591Chr04:32793548..32793572 (25 bp)
CATTACTTGTTATGGCTGGCACTTT
LOC_Os04g55500
Os.5453.1.S1_at--131--7311Chr04:32793576..32793600 (25 bp)
GTGCTCTCTACCCATCGATAAAAAT
LOC_Os04g55500
Os.5453.1.S1_at--355--5671Chr04:32793620..32793644 (25 bp)
GACATGACACAACTTCTGCTAGATA
LOC_Os04g55500
Os.5453.1.S1_at--623--4731Chr04:32793657..32793681 (25 bp)
GCTGTGATACCCTATTCTGTGTGAT
LOC_Os04g55500
Os.5453.1.S1_at--1004--6471Chr04:32793679..32793703 (25 bp)
GATAGCAACACGATAGGTCCCAGCA
LOC_Os04g55500
Os.5453.1.S1_at--609--4951Chr04:32793795..32793819 (25 bp)
GCATTTGTGCGTGTCGGCAGTGTAA
LOC_Os04g55500
Target Sequence 
TGGAAGGTCCTCTGGGTGATTTTAAGAGAAGGCTCGGACCAGCATGCTCTAAAAAAGTGTACACAATTCTCATGGCACAA
AATGGAGCGGCAGAAGTGGAAGTTGATAGGCGTGGAGCTTAGCTTAGCCTTCCATGCTCACATCGTCCTAAATCATGAAA
GGTCGATTTTGTATTTATGGCCCTTTTGTCCATATTGTTTAGATGAAGCTTCAAGGTAGTTAATGTGATGTTCTTGGTGC
TGAAGCCATTACTTGTTATGGCTGGCACTTTAATGTGCTCTCTACCCATCGATAAAAATGAAATTATCGTAAACTGAAGA
CATGACACAACTTCTGCTAGATATCTGGATGATAGGCTGTGATACCCTATTCTGTGTGATAGCAACACGATAGGTCCCAG
CAATTTTGCAACTTTTGTAAAGTTCGTGACTATTGAGAAAGGTTCAAGTAAATAGGTTGGTACTGGAACCTAAAAAACAT
ATTGAACGGCACTGCATTTGTGCGTGTCGGCAGTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5453.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis