Browse Element(s) Details


Os.54539.1.S1_at

Description gb:AK105557.1
DB_XREF= gi:32990766
TID=Os.54539.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54539 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-128-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-B05, full insert sequence.
FL= gb:AK105557.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1229011/11expressed protein
LOC_Os02g469201/11Transposable element protein, putative, Transposase_24, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g12250NANA11+6838347..6840120hypothetical protein
LOC_Os11g12260OsAffx.7088.1.S1_at11/1111+6840766..6843840NBS-LRR type disease resistance protein, putative, expressed
LOC_Os11g12270Os.49584.1.S1_at10/1111+6846676..6849327expressed protein
LOC_Os11g12280OsAffx.7090.1.S1_at11/1111+6855741..6856634hypothetical protein
LOC_Os11g12290Os.54539.1.S1_at11/1111+6861269..6863346expressed protein
LOC_Os11g12300OsAffx.7091.1.S1_at11/1111+6867498..6868517NBS-LRR disease resistance protein, putative
LOC_Os11g12310NANA11+6869421..6870989retrotransposon protein, putative, unclassified
LOC_Os11g12320NANA11+6871407..6872879Leucine Rich Repeat family protein
LOC_Os11g12330OsAffx.30940.1.S1_at11/1111+6877310..6880363NB-ARC domain containing protein, expressed
LOC_Os11g12340Os.4192.1.S1_at11/1111+6883826..6891811NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54539.1.S1_at--951--2271Chr11:6861824..6861848 (25 bp)
AAATGATTCCCCAATCCCGGCAATT
LOC_Os11g12290
Os.54539.1.S1_at--468--2531Chr11:6861778..6861802 (25 bp)
AACTATCTGCACTCGTAGGCTTCTA
LOC_Os11g12290
Os.54539.1.S1_at--717--4691Chr11:6861742..6861766 (25 bp)
GCGGCTGCAGACGTGGTTTCTTCCT
LOC_Os11g12290
Os.54539.1.S1_at--865--8031Chr11:6861674..6861698 (25 bp)
GGAGTCTGCCTGGACAACCGCGTTT
LOC_Os11g12290
Os.54539.1.S1_at--1056--4611Chr11:6861655..6861679 (25 bp)
GCGTTTCCCGGTATTTGGCTCTCTT
LOC_Os11g12290
Os.54539.1.S1_at--192--10591Chr11:6861624..6861648 (25 bp)
TTCTCCTTTTCTTAACTTATGTCTG
LOC_Os11g12290
Os.54539.1.S1_at--615--4531Chr11:6861432..6861456 (25 bp)
GCCCCTGCTGCCCAAGTGGTTTTAG
LOC_Os11g12290
Os.54539.1.S1_at--294--10071Chr11:6861410..6861434 (25 bp)
TAGGGCCGAGCCCAACACATGGAGC
LOC_Os11g12290
Os.54539.1.S1_at--300--5091Chr11:6861383..6861407 (25 bp)
GCACCGAAGCGCACTACAGGATGTA
LOC_Os11g12290
Os.54539.1.S1_at--503--2933Chr04:1761559..1761583 (25 bp)
AAGGCATTTTGTGGAAGGCATTTCT
NONE
Os.54539.1.S1_at--235--2435Chr12:27040035..27040059 (25 bp)
AAAACTGCCTCAAATCATCTCTTTC
NONE
Target Sequence 
AAATGATTCCCCAATCCCGGCAATTCCTCTCCGGGCTGTGGCTCCCAACTATCTGCACTCGTAGGCTTCTAGCAGCCCGA
CGGCGGCTGCAGACGTGGTTTCTTCCTCCGCCGACCCCATCGTGATTCCCGCAGACTCCGAGGGCTCGGGGGAGTCTGCC
TGGACAACCGCGTTTCCCGGTATTTGGCTCTCTTTCTTTTTTCTCCTTTTCTTAACTTATGTCTGACACAGGTGGGGGTT
CGGGAGTTGCTCCGGGCGCGGAGGAATCATCCCCGCCTACTCCGGTGACTGTTCCTGGCTCCGATGGGGGAAACCAGGGG
GCGGTGAACACCGGCGCTACGGCCGCTCCGGAGAGCCACGGGGGTGAGCTCTGGACACCTGCGGCCTCAGACGCCCCTGC
TGCCCAAGTGGTTTTAGGGCCGAGCCCAACACATGGAGCGCGCACCGAAGCGCACTACAGGATGTATGTCATTTAAAGGC
ATTTTGTGGAAGGCATTTCTTTAAAACTGCCTCAAATCATCTCTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54539.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis