Browse Element(s) Details


Os.54567.1.S1_at

Description gb:AK105805.1
DB_XREF= gi:32991014
TID=Os.54567.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54567 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-B06, full insert sequence.
FL= gb:AK105805.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4520011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45140Os.26579.1.S1_at11/114+26470776..26473578expressed protein
LOC_Os04g45160OsAffx.14274.1.A1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.1.S1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.2.S1_x_at9/114+26476543..26481414expressed protein
LOC_Os04g45170OsAffx.26672.1.S1_x_at11/114+26487650..26489451serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os04g45170Os.56192.1.S1_at11/114+26487650..26489451serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os04g45180Os.52243.1.S1_at11/114+26490184..26493410EF hand family protein, expressed
LOC_Os04g45190Os.11087.1.A1_at11/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190OsAffx.26470.1.S1_x_at6/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190OsAffx.26470.1.S1_at4/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190Os.24612.1.A1_at1/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45200Os.54567.1.S1_at11/114+26497361..26500426expressed protein
LOC_Os04g45200Os.54567.1.S1_x_at10/114+26497361..26500426expressed protein
LOC_Os04g45200OsAffx.26470.1.S1_at5/114+26497361..26500426expressed protein
LOC_Os04g45200OsAffx.26470.1.S1_x_at3/114+26497361..26500426expressed protein
LOC_Os04g45200Os.56488.1.S1_at1/114+26497361..26500426expressed protein
LOC_Os04g45210Os.49185.1.S1_at11/114+26500992..26501945Peroxisomal biogenesis factor 11 family protein, expressed
LOC_Os04g45220OsAffx.26471.1.S1_at11/114+26502932..26503540hypothetical protein
LOC_Os04g45230OsAffx.4096.1.S1_at11/114+26506311..26506652hypothetical protein
LOC_Os04g45240Os.23271.2.A1_x_at1/114+26508238..26517894expressed protein
LOC_Os04g45254NANA4+26523040..26523317NA

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Gene Ontology Classification
GO idTypeName
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54567.1.S1_at--574--6751Chr04:26497559..26497583 (25 bp)
GTTCAGGTTTACATGTTTTGCTCAT
LOC_Os04g45200
Os.54567.1.S1_at--923--7871Chr04:26497554..26497578 (25 bp)
GGTTTACATGTTTTGCTCATGCCTC
LOC_Os04g45200
Os.54567.1.S1_at--263--10491Chr04:26497551..26497575 (25 bp)
TTACATGTTTTGCTCATGCCTCTGC
LOC_Os04g45200
Os.54567.1.S1_at--14--751Chr04:26497547..26497571 (25 bp)
ATGTTTTGCTCATGCCTCTGCCATC
LOC_Os04g45200
Os.54567.1.S1_at--854--591Chr04:26497536..26497560 (25 bp)
ATGCCTCTGCCATCTGCAGCACGAA
LOC_Os04g45200
Os.54567.1.S1_at--1046--9191Chr04:26497529..26497553 (25 bp)
TGCCATCTGCAGCACGAAATGCTAT
LOC_Os04g45200
Os.54567.1.S1_at--709--2451Chr04:26497425..26497449 (25 bp)
AACAATTATCAGACTGTGTGTAATC
LOC_Os04g45200
Os.54567.1.S1_at--723--391Chr04:26497418..26497442 (25 bp)
ATCAGACTGTGTGTAATCACTCTTG
LOC_Os04g45200
Os.54567.1.S1_at--896--5731Chr04:26497414..26497438 (25 bp)
GACTGTGTGTAATCACTCTTGTACA
LOC_Os04g45200
Os.54567.1.S1_at--951--7471Chr04:26497410..26497434 (25 bp)
GTGTGTAATCACTCTTGTACATACA
LOC_Os04g45200
Os.54567.1.S1_at--1--7071Chr04:26497406..26497430 (25 bp)
GTAATCACTCTTGTACATACAAAGT
LOC_Os04g45200
Target Sequence 
GTTCAGGTTTACATGTTTTGCTCATGCCTCTGCCATCTGCAGCACGAAATGCTATTCTGATGCTACTCCTGGCACCGTCT
GGGGTTGCTCACAGGTGCCTTCTTCATCAACTAGTTCAGTAGATCGTATAGACGAACAATTATCAGACTGTGTGTAATCA
CTCTTGTACATACAAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54567.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis