Browse Element(s) Details


Os.54578.1.S1_at

Description gb:AK105928.1
DB_XREF= gi:32991137
TID=Os.54578.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54578 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-A11, full insert sequence.
FL= gb:AK105928.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3560011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35560Os.27755.1.S1_at11/117+21278612..21280941Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35570OsAffx.28764.1.S1_at11/117+21291434..21292444MBOAT family protein, expressed
LOC_Os07g35580Os.19978.1.S1_at11/117+21293506..21297882Protein kinase domain containing protein, expressed
LOC_Os07g35600Os.54578.1.S1_at11/117+21297939..21309645expressed protein
LOC_Os07g35600OsAffx.28765.1.S1_at1/117+21297939..21309645expressed protein
LOC_Os07g35610OsAffx.16571.1.S1_at10/117+21313950..21318698Kelch motif family protein, expressed
LOC_Os07g35620OsAffx.16572.3.S1_at11/117+21324007..21324669expressed protein
LOC_Os07g35630OsAffx.2182.1.S1_at1/117+21331886..21335913retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g35630OsAffx.828.1.S1_x_at1/117+21331886..21335913retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54578.1.S1_at--606--1651Chr07:21306976..21307000 (25 bp)
AGCGCCAATGTTTTATCGGTCTTAG
LOC_Os07g35600
Os.54578.1.S1_at--1027--6871Chr07:21298319..21298343 (25 bp)
GTATTATGCTCTACAGACTACTGGA
LOC_Os07g35600
Os.54578.1.S1_at--994--8031Chr07:21298297..21298321 (25 bp)
GGAGTACAATATATCAGCTTCGCTT
LOC_Os07g35600
Os.54578.1.S1_at--806--4911Chr07:21298281..21298305 (25 bp)
GCTTCGCTTAAGCTATCTCTAAAGG
LOC_Os07g35600
Os.54578.1.S1_at--327--6091Chr07:21298241..21298265 (25 bp)
GAGTCGCCACGGGATTTGTATCATT
LOC_Os07g35600
Os.54578.1.S1_at--844--2931Chr07:21298114..21298138 (25 bp)
AAGGCTGAGCTGCATCACCATCAAG
LOC_Os07g35600
Os.54578.1.S1_at--28--8291Chr07:21298090..21298114 (25 bp)
GGCATCAAGACCTGCATTTGTTTTC
LOC_Os07g35600
Os.54578.1.S1_at--36--8791Chr07:21298072..21298096 (25 bp)
TGTTTTCTTTGTTGTCATCATCCTT
LOC_Os07g35600
Os.54578.1.S1_at--998--5711Chr07:21298043..21298067 (25 bp)
GACTCGTCCTTATTTGTTATTCCCA
LOC_Os07g35600
Os.54578.1.S1_at--955--91Chr07:21298025..21298049 (25 bp)
ATTCCCACGATGTTATTTGTTCAGT
LOC_Os07g35600
Os.54578.1.S1_at--133--3011Chr07:21297974..21297998 (25 bp)
AATGACGATGTTTGGCAGGAGGCTC
LOC_Os07g35600
Target Sequence 
AGCGCCAATGTTTTATCGGTCTTAGCAAGGATGTATTATGCTCTACAGACTACTGGAGTACAATATATCAGCTTCGCTTA
AGCTATCTCTAAAGGTTTGTTAAGACTTAAGAGTCGCCACGGGATTTGTATCATTGTATGGAAGAAGGCGCATGGTACCG
AGGATGAGAACGGGGGAACATCATGCGGAAAACTGGTGTGGAAGGGGCGCGTTTGTGTTGTTTGGTATGCGATGGACAAG
GCTGAGCTGCATCACCATCAAGGCATCAAGACCTGCATTTGTTTTCTTTGTTGTCATCATCCTTGCTGGACTCGTCCTTA
TTTGTTATTCCCACGATGTTATTTGTTCAGTTCTTGCTATATTGGACAAAGGCTCTTAATGACGATGTTTGGCAGGAGGC
TC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54578.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis