Browse Element(s) Details


Os.54602.1.S1_s_at

Description gb:AK106153.1
DB_XREF= gi:32991362
TID=Os.54602.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54602 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-208-A01, full insert sequence.
FL= gb:AK106153.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3285011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32810Os.14324.1.S1_s_at1/114+19624933..19626935hypothetical protein
LOC_Os04g32820OsAffx.26295.1.S1_at11/114+19632003..19633064expressed protein
LOC_Os04g32830OsAffx.26295.2.S1_at11/114+19634661..19635554expressed protein
LOC_Os04g32840Os.49194.1.S1_at10/114+19638917..19640507expressed protein
LOC_Os04g32840OsAffx.22097.3.S1_at1/114+19638917..19640507expressed protein
LOC_Os04g32850Os.54602.1.S1_s_at11/114+19647736..19649497expressed protein
LOC_Os04g32850OsAffx.14103.1.S1_x_at11/114+19647736..19649497expressed protein
LOC_Os04g32850Os.27244.1.A1_s_at8/114+19647736..19649497expressed protein
LOC_Os04g32860Os.51171.1.S1_at11/114+19654178..19656880expressed protein
LOC_Os04g32870OsAffx.26296.1.S1_at11/114+19661722..19663182pentatricopeptide, putative
LOC_Os04g32880Os.48035.1.S1_at10/114+19663926..19671656CBS domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
GO:0016298molecular_functionlipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54602.1.S1_s_at--1010--9131Chr04:19648522..19648546 (25 bp)
TGCGAGAAGCCCAAGCCCTGTCACT
LOC_Os04g32850
Os.54602.1.S1_s_at--924--2651Chr04:19648510..19648534 (25 bp)
AAGCCCTGTCACTGCGAGAAGCCCA
LOC_Os04g32850
Os.54602.1.S1_s_at--1011--9131Chr04:19648498..19648522 (25 bp)
TGCGAGAAGCCCAAGCCATGCGAGA
LOC_Os04g32850
Os.54602.1.S1_s_at--592--1431Chr04:19648494..19648518 (25 bp)
AGAAGCCCAAGCCATGCGAGAAGCC
LOC_Os04g32850
Os.54602.1.S1_s_at--1149--7331Chr04:19648463..19648487 (25 bp)
GTGCAAGCCGGAGGAGCCGCCGAAG
LOC_Os04g32850
Os.54602.1.S1_s_at--111--8011Chr04:19648409..19648433 (25 bp)
GGAGTGCAAGCTGGTGCCGTACCCT
LOC_Os04g32850
Os.54602.1.S1_s_at--502--4711Chr04:19648400..19648424 (25 bp)
GCTGGTGCCGTACCCTTACCCGGTG
LOC_Os04g32850
Os.54602.1.S1_s_at--841--4491Chr04:19648130..19648154 (25 bp)
GCCGTGGTGCTACACCGAGGACAAC
LOC_Os04g32850
Os.54602.1.S1_s_at--443--391Chr04:19648058..19648082 (25 bp)
ATCACGATCATCTCTGCTGCTTAAT
LOC_Os04g32850
Os.54602.1.S1_s_at--600--9611Chr04:19648051..19648075 (25 bp)
TCATCTCTGCTGCTTAATTTCCTTG
LOC_Os04g32850
Os.54602.1.S1_s_at--937--891Chr04:19647814..19647838 (25 bp)
AGGCTCACTAAACTCATAAACTGTA
LOC_Os04g32850
Target Sequence 
TGCGAGAAGCCCAAGCCCTGTCACTGCGAGAAGCCCAAGCCATGCGAGAAGCCGCCGCCGTGCAAGCCGGAGGAGCCGCC
GAAGCCGCCGCCGGAGAAGCCGCCGCCGAAGCCGGAGTGCAAGCTGGTGCCGTACCCTTACCCGGTGCCGTACCCGTACG
CCGGGCAGTGGTGCTGCCCAAAGCCTGAGCCGCCGAAGCCGCCGCCGCCCGTCTGCCCGCCGCCGCCGTGGTGCTACACC
GAGGACAACGCCAACGCCTGCTCCATCATGTGATGGCCGGCCGGCGGTCGGCGTCGATCACGATCATCTCTGCTGCTTAA
TTTCCTTGCTTGCTACTACCTCTGCTCCTTTCCTTGCCTCGGAAATCGGAATAAATTAAACACGAGGCTGATCGATGTGT
TTGTAATTAATCCATGGTGTTTGTGTTGTGTGCTGTGTGGGCTGTATAATAATTAATTACAGTATGTTCATGTAAATTTG
TTTGTTTGTTTGTTTATGTTGTTCGATATGTATAATTATGTACAATAATTAATCGTGGAGAGGCTCACTAAACTCATAAA
CTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54602.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis