Browse Element(s) Details


Os.54617.1.S1_at

Description gb:AK106255.1
DB_XREF= gi:32991464
TID=Os.54617.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54617 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-E10, full insert sequence.
FL= gb:AK106255.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2046011/11Guanylate kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20450Os.49215.1.S1_at11/113+11564133..11568807Leucine Rich Repeat family protein, expressed
LOC_Os03g20450Os.49215.1.S2_at6/113+11564133..11568807Leucine Rich Repeat family protein, expressed
LOC_Os03g20460Os.54617.1.S1_at11/113+11574287..11577890Guanylate kinase family protein, expressed
LOC_Os03g20470Os.20198.1.S1_at11/113+11578668..11581709Membrane steroid binding protein 1, putative, expressed
LOC_Os03g20470Os.54649.1.S1_at1/113+11578668..11581709Membrane steroid binding protein 1, putative, expressed
LOC_Os03g20480Os.11156.1.S1_at11/113+11582077..11582711expressed protein
LOC_Os03g20490NANA3+11582947..11587267retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g20500Os.5812.1.S1_at11/113+11592064..11593574F-box domain containing protein, expressed
LOC_Os03g20520Os.10805.1.S1_at11/113+11600755..11606684Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009117biological_processnucleotide metabolism
GO:0004385molecular_functionguanylate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54617.1.S1_at--375--2311Chr03:11577305..11577329 (25 bp)
AAAGGCTAATTCACCGCAAAACAGA
LOC_Os03g20460
Os.54617.1.S1_at--634--10551Chr03:11577344..11577368 (25 bp)
TTCTTGTCAGAGTTGCAACGGCCAG
LOC_Os03g20460
Os.54617.1.S1_at--290--2131Chr03:11577444..11577468 (25 bp)
ACAGGTGGAGTCTATCATTGATGCT
LOC_Os03g20460
Os.54617.1.S1_at--879--5271Chr03:11577471..11577495 (25 bp)
GAAGGCTAAGGTCCACAAACGTACG
LOC_Os03g20460
Os.54617.1.S1_at--118--6991Chr03:11577491..11577515 (25 bp)
GTACGGTTAATATCTAGTCAATGCT
LOC_Os03g20460
Os.54617.1.S1_at--1005--7071Chr03:11577507..11577531 (25 bp)
GTCAATGCTCATAAGTCACATGCTC
LOC_Os03g20460
Os.54617.1.S1_at--752--7091Chr03:11577521..11577545 (25 bp)
GTCACATGCTCTTTTAACGGTTTGG
LOC_Os03g20460
Os.54617.1.S1_at--583--6191Chr03:11577594..11577618 (25 bp)
GAGGAAATCGCCAATGACAATCTGA
LOC_Os03g20460
Os.54617.1.S1_at--860--5591Chr03:11577609..11577633 (25 bp)
GACAATCTGACCTGACTCTTACAAA
LOC_Os03g20460
Os.54617.1.S1_at--2--2071Chr03:11577751..11577775 (25 bp)
ACTTGTGCAACTCTTTCTGGGTAGA
LOC_Os03g20460
Os.54617.1.S1_at--573--2531Chr03:11577837..11577861 (25 bp)
AACTACTAATAACTGCTTGGGATGA
LOC_Os03g20460
Target Sequence 
AAAGGCTAATTCACCGCAAAACAGAAACATCAGATATGCTTCTTGTCAGAGTTGCAACGGCCAGAGAAGAGGTGAAACGC
ATGAACAATTTTGATTATGTAGTTGTCAATTCTGAAGGGAATCTTGAGGGGGCTGTTAAACAGGTGGAGTCTATCATTGA
TGCTGAGAAGGCTAAGGTCCACAAACGTACGGTTAATATCTAGTCAATGCTCATAAGTCACATGCTCTTTTAACGGTTTG
GAGGAAAATTACCTGGTATTTTTAATCAATTCAAGTTTGAACTATTGTGGAGGAAATCGCCAATGACAATCTGACCTGAC
TCTTACAAAAAAGGCCAATTTGACTTACATTAAATTTGTAGCTGTAAGTCAGAAAGTGAAGTGCATGGCAAGTCATTGGA
GTTAAATACTGAATATCCTGATTCAAGTGGCTTATAACAGCAATGTACTTGTGCAACTCTTTCTGGGTAGAAGTAGGTAC
TTTTTATTATTTATATATTATCTGTATTTTATTTGTTTGTTCGAATATTACAAACTACTAATAACTGCTTGGGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54617.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis