Browse Element(s) Details


Os.54630.1.S1_at

Description gb:AK106310.1
DB_XREF= gi:32991519
TID=Os.54630.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54630 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-D02, full insert sequence.
FL= gb:AK106310.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0870011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08660OsAffx.25032.1.S1_s_at2/113+4443307..4444212satase isoform II, putative
LOC_Os03g08670OsAffx.3175.1.S1_at11/113+4446746..4447704hypothetical protein
LOC_Os03g08670Os.31623.1.S1_x_at1/113+4446746..4447704hypothetical protein
LOC_Os03g08670Os.31623.1.S1_at1/113+4446746..4447704hypothetical protein
LOC_Os03g08680Os.52797.1.S1_at7/113+4450739..4455226Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g08680Os.19940.1.S1_s_at1/113+4450739..4455226Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g08690Os.50581.1.S1_at11/113+4458791..4460364expressed protein
LOC_Os03g08700Os.54630.1.S1_at11/113+4461999..4468617expressed protein
LOC_Os03g08710OsAffx.12788.1.S1_at11/113+4469068..4469445expressed protein
LOC_Os03g08720Os.55882.1.S1_at11/113+4471201..4473165Transferase family protein, expressed
LOC_Os03g08730Os.31563.1.S1_at11/113+4475846..4479962uroporphyrinogen-III synthase family protein, putative, expressed
LOC_Os03g08740Os.49808.1.S1_at11/113+4492515..4497652expressed protein
LOC_Os03g08740Os.49808.1.S2_at11/113+4492515..4497652expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54630.1.S1_at--271--5991Chr03:4467509..4467532 (24 bp)
GAGACTCAAGTCACACCGATCGTTG
LOC_Os03g08700
Os.54630.1.S1_at--400--9271Chr03:4468125..4468149 (25 bp)
TCCTGGCGTCCACTGATCATATAAA
LOC_Os03g08700
Os.54630.1.S1_at--618--6991Chr03:4468183..4468207 (25 bp)
GTACGCAGACACCTTGGCATTTTTG
LOC_Os03g08700
Os.54630.1.S1_at--1072--7571Chr03:4468280..4468304 (25 bp)
GGGCGGCCTATGGTATACAACACTT
LOC_Os03g08700
Os.54630.1.S1_at--71--2471Chr03:4468298..4468322 (25 bp)
AACACTTCGGGTGGAAACGCTGGAT
LOC_Os03g08700
Os.54630.1.S1_at--766--271Chr03:4468321..4468345 (25 bp)
ATAGGATTTCCTTCGGCATTATGGG
LOC_Os03g08700
Os.54630.1.S1_at--709--6571Chr03:4468349..4468373 (25 bp)
GATTCTGTTTCTTCTGCATCAGAGA
LOC_Os03g08700
Os.54630.1.S1_at--733--6051Chr03:4468370..4468394 (25 bp)
GAGATTCTCGTCTGTTTAGTTGATC
LOC_Os03g08700
Os.54630.1.S1_at--939--5411Chr03:4468427..4468451 (25 bp)
GAAGCCTTAGCCCAATCATACAGTA
LOC_Os03g08700
Os.54630.1.S1_at--1089--9991Chr03:4468482..4468506 (25 bp)
TAGCTGTAAATAGTTGCCCCTCTTG
LOC_Os03g08700
Os.54630.1.S1_at--750--4371Chr03:4468585..4468609 (25 bp)
CCACACACCCCGTTGATTATGAAAT
LOC_Os03g08700
Target Sequence 
GAGACTCAAGTCACACCGATCGTTGAAGGTTACGGTGGTTGGGCACTTCGGATGGAGATAGTACCGATTGAATCTGCATA
CCCAGGATACGGGGAACTTGTTGTCCTGGCGTCCACTGATCATATAAATTCGTGTAAGCCGGTCAATAAGAACGACCCGT
CGTACGCAGACACCTTGGCATTTTTGGAGAAAATATTGAAATCGCGTCTCAAAGAATCAGAATCCTAGTTTTTTTTTTTC
CTTTTAACTTCTCAAATATGGGCGGCCTATGGTATACAACACTTCGGGTGGAAACGCTGGATAGGATTTCCTTCGGCATT
ATGGGGGAGATTCTGTTTCTTCTGCATCAGAGATTCTCGTCTGTTTAGTTGATCTGATCTGACAATTTGGGCGGGCTGTG
TTTTATGAAGCCTTAGCCCAATCATACAGTACACGAACGAATTACATCTACAAATAGAGGATAGCTGTAAATAGTTGCCC
CTCTTGTAAGAAGAAAAAAGGAAATATATGTATGCTCTCTGAATGACATGTATTATTTTTCTCTCGAAATTCATAAGCAT
GTAACCACACACCCCGTTGATTATGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54630.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis