Browse Element(s) Details


Os.54647.1.S1_at

Description gb:AK106371.1
DB_XREF= gi:32991580
TID=Os.54647.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54647 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-C09, full insert sequence.
FL= gb:AK106371.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1688011/11Heat shock cognate 70 kDa protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16850OsAffx.12886.1.S1_at11/113+9338517..9339986Dof domain, zinc finger family protein, expressed
LOC_Os03g16860Os.11029.1.S1_at11/113+9349211..9352126Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16870Os.16498.1.S1_at8/113+9352280..9354845expressed protein
LOC_Os03g16874Os.9995.1.S1_at10/113+9355035..9356774expressed protein
LOC_Os03g16880Os.54647.1.S1_at11/113+9356944..9361643Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16880Os.52782.1.S1_at1/113+9356944..9361643Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16890Os.8831.1.S1_at11/113+9361976..9366471glycosyltransferase family 14 protein, putative, expressed
LOC_Os03g16890Os.27502.1.S1_s_at1/113+9361976..9366471glycosyltransferase family 14 protein, putative, expressed
LOC_Os03g16900Os.6346.1.S1_at11/113+9371400..9374798Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os03g16910Os.27079.1.A1_at11/113+9381693..9384605SLT1 protein, putative, expressed
LOC_Os03g16910OsAffx.2532.1.S1_at1/113+9381693..9384605SLT1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009615biological_processresponse to virus
GO:0005829cellular_componentcytosol
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54647.1.S1_at--763--1731Chr03:9357421..9357445 (25 bp)
ACCATCCCCGTAAGCAGGCAGAAAA
LOC_Os03g16880
Os.54647.1.S1_at--1000--5511Chr03:9357401..9357425 (25 bp)
GAAAATGTACACTACCCACTACGAC
LOC_Os03g16880
Os.54647.1.S1_at--680--5411Chr03:9357330..9357354 (25 bp)
GAACCAAGGATAACAACCCGCTCGG
LOC_Os03g16880
Os.54647.1.S1_at--304--9451Chr03:9357309..9357333 (25 bp)
TCGGCAAGTTTGTTCTCACCGGCAT
LOC_Os03g16880
Os.54647.1.S1_at--309--1271Chr03:9357258..9357282 (25 bp)
AGATCAACGTCACCTTCAGCATTGA
LOC_Os03g16880
Os.54647.1.S1_at--755--2151Chr03:9357180..9357204 (25 bp)
ACAGCATCACCATCAAGAGCGACAA
LOC_Os03g16880
Os.54647.1.S1_at--129--1611Chr03:9357071..9357095 (25 bp)
AGCTGAAGGCTATGTGGCACCCTAA
LOC_Os03g16880
Os.54647.1.S1_at--1153--5471Chr03:9357043..9357067 (25 bp)
GAACTATATTTCTTCTGCGTCTTCT
LOC_Os03g16880
Os.54647.1.S1_at--248--4651Chr03:9357027..9357051 (25 bp)
GCGTCTTCTGATCATGCACGGGCAT
LOC_Os03g16880
Os.54647.1.S1_at--462--271Chr03:9357004..9357028 (25 bp)
ATATGTATGGCCCTAACATGTGCCT
LOC_Os03g16880
Os.54647.1.S1_at--231--3511Chr03:9356988..9357012 (25 bp)
CATGTGCCTTGTTTATGCTGGAAGT
LOC_Os03g16880
Target Sequence 
ACCATCCCCGTAAGCAGGCAGAAAATGTACACTACCCACTACGACAACGAGACCGCCGTGCTCATCAACGTGAACGAGGG
CGAAGGCCGAAGAACCAAGGATAACAACCCGCTCGGCAAGTTTGTTCTCACCGGCATCCCACCGGCGCCGAGGGGCGTGC
CCCAGATCAACGTCACCTTCAGCATTGATTATAACGGCATCATGAACGTGTCCGCGGAGGACAAGACGACGGGACGCAGC
AACAGCATCACCATCAAGAGCGACAAGGGGAGGCTGAGCAAGGAGGAGATCGAGAGGATGGTGAAGAAGGCCGAGAAGTA
CAAGGCCGAGGATGAGGAGGAGATGAAGAAAGCTGAAGGCTATGTGGCACCCTAAAGAGAACTATATTTCTTCTGCGTCT
TCTGATCATGCACGGGCATATGTATGGCCCTAACATGTGCCTTGTTTATGCTGGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54647.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis