Browse Element(s) Details


Os.54677.1.S1_at

Description gb:AK106452.1
DB_XREF= gi:32991661
TID=Os.54677.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54677 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-F02, full insert sequence.
FL= gb:AK106452.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0649011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06460OsAffx.5232.1.S1_s_at11/117+3123214..3124011expressed protein
LOC_Os07g06460OsAffx.5232.1.S1_at11/117+3123214..3124011expressed protein
LOC_Os07g06470OsAffx.5233.1.S1_at11/117+3126100..3128469CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os07g06480OsAffx.28307.1.S1_at11/117+3128829..3129099hypothetical protein
LOC_Os07g06490Os.54677.1.S1_at11/117+3148558..3150943expressed protein
LOC_Os07g06500Os.18422.1.A1_at11/117+3151881..3155409F-box domain containing protein, expressed
LOC_Os07g06500Os.20860.1.S1_at1/117+3151881..3155409F-box domain containing protein, expressed
LOC_Os07g06510Os.20602.2.S1_x_at11/117+3156193..3158373hAT family dimerisation domain containing protein
LOC_Os07g06530OsAffx.28308.1.S1_at11/117+3167547..3170311hypothetical protein
LOC_Os07g06530Os.5526.1.S1_at7/117+3167547..3170311hypothetical protein
LOC_Os07g06530OsAffx.28308.2.S1_x_at1/117+3167547..3170311hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54677.1.S1_at--79--571Chr07:3149702..3149726 (25 bp)
ATCCTCTTCAACGATTGATCTCCAT
LOC_Os07g06490
Os.54677.1.S1_at--1018--2731Chr07:3148905..3148929 (25 bp)
AAGAAGTGGCCTCTGTTATTTCTCC
LOC_Os07g06490
Os.54677.1.S1_at--634--151Chr07:3148888..3148912 (25 bp)
ATTTCTCCCGGTGTCTGAAACCTGA
LOC_Os07g06490
Os.54677.1.S1_at--699--9571Chr07:3148830..3148854 (25 bp)
TCTTCTGTTCTTGCCATGATACTTG
LOC_Os07g06490
Os.54677.1.S1_at--652--6471Chr07:3148813..3148837 (25 bp)
GATACTTGGTGTAATCGTCTGTAGA
LOC_Os07g06490
Os.54677.1.S1_at--92--7391Chr07:3148770..3148794 (25 bp)
GTGAGCAACAACCTAATGCGAAGCA
LOC_Os07g06490
Os.54677.1.S1_at--938--5051Chr07:3148748..3148772 (25 bp)
GCAGCAGGTGTTGCCTGGATCATCT
LOC_Os07g06490
Os.54677.1.S1_at--1041--351Chr07:3148688..3148712 (25 bp)
ATAATCATCCAATGCATTTGCCTAG
LOC_Os07g06490
Os.54677.1.S1_at--58--211Chr07:3148673..3148697 (25 bp)
ATTTGCCTAGAGCTAGCAGCCTAAG
LOC_Os07g06490
Os.54677.1.S1_at--410--8331Chr07:3148649..3148673 (25 bp)
GGCTGCCTGTGCCTGAATGCATTAG
LOC_Os07g06490
Os.54677.1.S1_at--497--2631Chr07:3148562..3148586 (25 bp)
AACCTCTTGCAAAGCTACTACTACT
LOC_Os07g06490
Target Sequence 
ATCCTCTTCAACGATTGATCTCCATTGCTGCTGCTCTGCTCATCANAGGAGTTGATTTTGCAGAAGAAGTGGCCTCTGTT
ATTTCTCCCGGTGTCTGAAACCTGAGAAGTTCAGAGTTTCAGAGTTTCAGTCCCTTCCTCTTCTGTTCTTGCCATGATAC
TTGGTGTAATCGTCTGTAGATTAGAAAAAAGAAAGCAAGTGAGCAACAACCTAATGCGAAGCAGCAGGTGTTGCCTGGAT
CATCTCATCAGATAACATGATGATCTCATGATCCATCTATATAATCATCCAATGCATTTGCCTAGAGCTAGCAGCCTAAG
GCTGCCTGTGCCTGAATGCATTAGCTGATGAAGTGTCAAATGTCAATTAGTGTTCAGTAATCAGTACTAGTATACTGCAA
TTAATAAACCTCTTGCAAAGCTACTACTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54677.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis