Browse Element(s) Details


Os.54683.1.S1_at

Description gb:AK106463.1
DB_XREF= gi:32991672
TID=Os.54683.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54683 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-G11, full insert sequence.
FL= gb:AK106463.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0542011/11IWS1 C-terminus family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05370NANA1+2532627..2537565retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g05380Os.51592.1.S1_at10/111+2538815..2539230hypothetical protein
LOC_Os01g05390OsAffx.10916.1.S1_at11/111+2544717..2545100hypothetical protein
LOC_Os01g05400OsAffx.10917.1.S1_at11/111+2547748..2548923hypothetical protein
LOC_Os01g05410OsAffx.22782.1.S1_x_at11/111+2550422..2550823hypothetical protein
LOC_Os01g05420Os.54683.1.S1_at11/111+2557699..2562175IWS1 C-terminus family protein, expressed
LOC_Os01g05420Os.16530.1.S1_at11/111+2557699..2562175IWS1 C-terminus family protein, expressed
LOC_Os01g05430OsAffx.23124.2.S1_s_at11/111+2563506..2566252Rhomboid family protein, expressed
LOC_Os01g05430OsAffx.23124.1.S1_at11/111+2563506..2566252Rhomboid family protein, expressed
LOC_Os01g05440OsAffx.22780.1.S1_x_at11/111+2566874..2568799XH domain containing protein, expressed
LOC_Os01g05450OsAffx.22779.1.S1_at11/111+2569851..2571003hypothetical protein
LOC_Os01g05450OsAffx.23031.1.S1_s_at1/111+2569851..2571003hypothetical protein
LOC_Os01g05460OsAffx.23031.1.S1_s_at11/111+2572385..2575012hypothetical protein
LOC_Os01g05460OsAffx.23031.2.S1_at8/111+2572385..2575012hypothetical protein
LOC_Os01g05460OsAffx.23031.1.S1_at7/111+2572385..2575012hypothetical protein
LOC_Os01g05460Os.12614.1.A1_at1/111+2572385..2575012hypothetical protein
LOC_Os01g05470Os.18514.1.S1_at11/111+2576367..2580377XS domain containing protein, expressed
LOC_Os01g05480Os.31681.1.S1_at11/111+2581788..2584497ternary complex factor MIP1, putative, expressed
LOC_Os01g05490Os.22886.1.A1_at11/111+2586456..2590401Triosephosphate isomerase, cytosolic, putative, expressed
LOC_Os01g05490Os.12602.1.S1_at11/111+2586456..2590401Triosephosphate isomerase, cytosolic, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54683.1.S1_at--323--4731Chr01:2558815..2558839 (25 bp)
GCTGGGTTATCTTTTATGTTGCATT
LOC_Os01g05420
Os.54683.1.S1_at--474--6671Chr01:2558832..2558856 (25 bp)
GTTGCATTTGCTGGTTCATTCACAT
LOC_Os01g05420
Os.54683.1.S1_at--315--10791Chr01:2558903..2558927 (25 bp)
TTGTTAGTGGTCTTTGTTGCAGCCT
LOC_Os01g05420
Os.54683.1.S1_at--843--5071Chr01:2558921..2558945 (25 bp)
GCAGCCTGTGCTTTGCAATTAGGAT
LOC_Os01g05420
Os.54683.1.S1_at--34--1631Chr01:2558950..2558974 (25 bp)
AGCGGATATCACTTACCGAACTTAT
LOC_Os01g05420
Os.54683.1.S1_at--84--2011Chr01:2558977..2559001 (25 bp)
ACTCGTGGTTACATTTGCTCTCTAG
LOC_Os01g05420
Os.54683.1.S1_at--1112--3691Chr01:2559052..2559076 (25 bp)
CTAGGCTCCTTGTGACTTAACATCT
LOC_Os01g05420
Os.54683.1.S1_at--327--8271Chr01:2559102..2559126 (25 bp)
GGCAGATTTTGCCTCTTGAGAACCA
LOC_Os01g05420
Os.54683.1.S1_at--163--6471Chr01:2559128..2559152 (25 bp)
GATAACTTTTAGATTTTCCTGCCAG
LOC_Os01g05420
Os.54683.1.S1_at--289--10711Chr01:2559193..2559217 (25 bp)
TTGCGATTCCTTATTTCCGAGTGTA
LOC_Os01g05420
Os.54683.1.S1_at--884--8831Chr01:2559286..2559310 (25 bp)
TGATATTTGAGTTTGCCTGCCTACC
LOC_Os01g05420
Target Sequence 
GCTGGGTTATCTTTTATGTTGCATTTGCTGGTTCATTCACATGCTACTTGTTATTTTCCTAAGGATTCCAGATTATTCTT
GAGGTATTTTGTTAGTGGTCTTTGTTGCAGCCTGTGCTTTGCAATTAGGATGTCTAGCGGATATCACTTACCGAACTTAT
GTACTCGTGGTTACATTTGCTCTCTAGTATCAGTTTACGGATTTGTTAAATATGTTTTGTTGCTTAATATTGAGTCACTA
GGCTCCTTGTGACTTAACATCTAGATGCCCTTGGATTAATTTTTCAAGGCAGATTTTGCCTCTTGAGAACCATGATAACT
TTTAGATTTTCCTGCCAGAATTTCAAATTGTTGATGTTATGCAATATTTAATCTATCGTTGCGATTCCTTATTTCCGAGT
GTAATACTTAGGAATAATTGAATAATTATTATCTTGGAAACATCATTAGGATGATACTTTGCTAATCTTCATGATATTTG
AGTTTGCCTGCCTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54683.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis